C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000411539 SEMA4B-001 ENSG00000185033 9606 + 15:90201319-90229676 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartKidneyLiverOvaryPlacentaTestisENST00000411539
Transcript ID Adipose Brain Heart Kidney Liver Ovary Placenta Testis
ENST00000411539 0.976±0.00 0.225±0.00 1.666±0.00 1.066±0.00 0.736±0.00 4.049±0.00 5.354±2.93 1.274±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00079J CIL_00079J_0001 CGP 15:90083045-90229679
CIL_0008FE CIL_0008FE_0001 VISTA 15:90100149-90701385
CIL_0000SV CIL_0000SV_0001 CGP 15:90160604-90234047

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007275 IEA multicellular organismal development
GO:0007399 IEA nervous system development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation
GO:0045202 IEA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000032754 Sema4b-001 protein_coding Mus_musculus 0 2250
ENSMUST00000107383 Sema4b-002 protein_coding Mus_musculus 0 1607
ENSMUST00000123023 Sema4b-003 retained_intron Mus_musculus 0 311

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