C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 3, subunit F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033342 Eif3f-001 ENSMUSG00000031029 10090 + 7:108934417-108942951 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033342
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033342 54.566±13.96 52.646±5.14 19.382±5.76 13.167±1.30 63.907±7.66 72.359±6.07 28.842±10.07 48.358±5.02 17.317±5.87 56.748±7.34 14.437±5.25 85.710±36.10 20.395±9.76 29.960±14.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096V CIL_00096V_0002 VISTA 7:108496607-109099113
CIL_0009BA CIL_0009BA_0002 VISTA 7:108813133-109417303
CIL_0008M3 CIL_0008M3_0002 VISTA 7:108861322-109462713
CIL_0009BB CIL_0009BB_0002 VISTA 7:108902812-109503341
CIL_00046G CIL_00046G_0002 CGP 7:108921860-108942951
CIL_00046S CIL_00046S_0002 CGP 7:108934417-109034460

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001731 IEA formation of translation preinitiation complex
GO:0003743 IDA translation initiation factor activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI protein binding
GO:0005852 IDA eukaryotic translation initiation factor 3 complex
GO:0006413 IDA translational initiation
GO:0006446 IEA regulation of translational initiation
GO:0006508 IEA proteolysis
GO:0016020 IEA membrane
GO:0016282 IEA eukaryotic 43S preinitiation complex
GO:0016579 IDA protein deubiquitination
GO:0031369 IDA translation initiation factor binding
GO:0033290 IEA eukaryotic 48S preinitiation complex
GO:0071541 IDA eukaryotic translation initiation factor 3 complex, eIF3m

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000152562 eif3f-001 protein_coding Danio_rerio 1e-26 126
ENST00000309828 EIF3F-201 protein_coding Homo_sapiens 0 1186
ENST00000434851 EIF3FP3-001 processed_pseudogene Homo_sapiens 0 1136
ENST00000528653 EIF3F-006 retained_intron Homo_sapiens 0 250
ENST00000528763 EIF3F-008 retained_intron Homo_sapiens 0 405
ENST00000530219 EIF3F-005 retained_intron Homo_sapiens 0 448
ENST00000531329 EIF3F-004 nonsense_mediated_decay Homo_sapiens 0 846
ENST00000531572 EIF3F-009 protein_coding Homo_sapiens 0 263
ENST00000532882 EIF3F-007 retained_intron Homo_sapiens 0 250
ENST00000533626 EIF3F-001 protein_coding Homo_sapiens 0 1208
ENST00000613970 EIF3S5P1-001 processed_pseudogene Homo_sapiens 0 856
ENST00000624447 AL356585.2-201 processed_pseudogene Homo_sapiens 0 870

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