C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 3, subunit F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000533626 EIF3F-001 ENSG00000175390 9606 + 11:7970251-8001862 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungMuscleOvaryTestisENST00000533626
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Muscle Ovary Testis
ENST00000533626 1.195±0.00 3.078±0.00 1.610±0.00 2.744±0.00 1.884±0.00 1.978±1.56 0.914±0.00 1.334±0.75 2.764±0.00 2.420±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096V CIL_00096V_0001 VISTA 11:7589795-8192277
CIL_0009BA CIL_0009BA_0001 VISTA 11:7904499-8509136
CIL_0008M3 CIL_0008M3_0001 VISTA 11:7953590-8554788
CIL_00046G CIL_00046G_0001 CGP 11:7959424-8001862
CIL_00046S CIL_00046S_0001 CGP 11:7970251-8106112

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001731 IEA formation of translation preinitiation complex
GO:0003743 TAS translation initiation factor activity
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0005852 IDA eukaryotic translation initiation factor 3 complex
GO:0006412 TAS translation
GO:0006413 IC translational initiation
GO:0006446 IEA regulation of translational initiation
GO:0006508 IEA proteolysis
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016282 IEA eukaryotic 43S preinitiation complex
GO:0016579 IDA protein deubiquitination
GO:0031369 IEA translation initiation factor binding
GO:0033290 IEA eukaryotic 48S preinitiation complex
GO:0044267 TAS cellular protein metabolic process
GO:0071541 IEA eukaryotic translation initiation factor 3 complex, eIF3m

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033342 Eif3f-001 protein_coding Mus_musculus 0 1208
ENSMUST00000147369 Eif3f-003 retained_intron Mus_musculus 0 309
ENSMUST00000153596 Eif3f-002 retained_intron Mus_musculus 0 296
ENSMUST00000162168 Zkscan5-004 nonsense_mediated_decay Mus_musculus 0.0000002 64

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