C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: von Hippel-Lindau binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000286428 VBP1-001 ENSG00000155959 9606 + X:155216366-155239817 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000286428
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000286428 6.891±0.00 10.982±0.00 2.099±0.00 21.507±4.22 9.343±2.87 8.832±6.90 12.369±6.09 10.953±5.88 5.283±2.70 9.569±3.95 8.720±3.27 12.607±4.23 9.701±2.85 10.481±2.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003LJ CIL_0003LJ_0001 CGP X:155071420-155239817
CIL_0003LK CIL_0003LK_0001 CGP X:155197007-155264589

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0006457 TAS:IEA protein folding
GO:0016272 IEA prefoldin complex
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044267 TAS cellular protein metabolic process
GO:0051082 IEA unfolded protein binding
GO:0051084 TAS 'de novo' posttranslational protein folding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033540 Vbp1-001 protein_coding Mus_musculus 0 1210
ENSMUST00000114070 Vbp1-002 protein_coding Mus_musculus 0 494
ENSMUST00000123419 Vbp1-003 retained_intron Mus_musculus 0 370

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