C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high-mobility group nucleosome binding domain 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033597 Hmgn5-001 ENSMUSG00000031245 10090 - X:109004534-109013404 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033597
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033597 1.651±0.47 1.274±0.54 5.845±1.76 4.914±0.04 0.722±0.41 1.248±0.45 1.596±0.22 2.924±0.67 10.249±7.60 1.518±0.20 2.599±0.29 4.662±4.93 91.058±93.62 7.895±13.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003KC CIL_0003KC_0002 CGP X:108737016-109013404
CIL_0003K8 CIL_0003K8_0002 CGP X:109004534-109197873

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0003682 IDA chromatin binding
GO:0005654 IDA nucleoplasm
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0016568 IEA chromatin modification
GO:0031492 IEA nucleosomal DNA binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358130 HMGN5-001 protein_coding Homo_sapiens 0 372
ENST00000373250 HMGN5-007 protein_coding Homo_sapiens 0 231
ENST00000430960 HMGN5-006 protein_coding Homo_sapiens 0 372
ENST00000436386 HMGN5-002 protein_coding Homo_sapiens 0 324
ENST00000447319 HMGN5-004 protein_coding Homo_sapiens 0 195
ENST00000451455 HMGN5-003 protein_coding Homo_sapiens 0 309
ENST00000491275 HMGN5-005 processed_transcript Homo_sapiens 3e-36 156

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