C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma binding protein 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033720 Rbbp7-001 ENSMUSG00000031353 10090 + X:162760402-162779092 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033720
Transcript ID Adipose Bladder Brain Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033720 7.549±2.73 56.617±5.63 27.031±3.02 7.634±1.36 7.145±1.29 92.357±29.94 7.434±0.00 20.225±3.13 56.202±38.19 168.204±22.11 5.899±1.82

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0003723 IPI RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006260 IEA DNA replication
GO:0006338 TAS chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0016581 ISS NuRD complex
GO:0030308 ISS negative regulation of cell growth
GO:0035098 ISS ESC/E(Z) complex
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0070370 ISS cellular heat acclimation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000130326 rbb4-201 protein_coding Danio_rerio 0 804
ENSDART00000048144 rbb4-001 protein_coding Danio_rerio 0 804
ENSDART00000132807 rbb4-002 processed_transcript Danio_rerio 0 307
ENST00000330735 RBBP7-003 retained_intron Homo_sapiens 0 924
ENST00000380084 RBBP7-008 protein_coding Homo_sapiens 0 2309
ENST00000380087 RBBP7-006 protein_coding Homo_sapiens 0 2780
ENST00000380122 TXLNG-001 protein_coding Homo_sapiens 0 270
ENST00000398155 TXLNG-201 protein_coding Homo_sapiens 0 267
ENST00000404022 RBBP7-010 protein_coding Homo_sapiens 0 2346
ENST00000416035 RBBP7-004 protein_coding Homo_sapiens 0 937
ENST00000425696 RBBP7-007 protein_coding Homo_sapiens 0 407
ENST00000444437 RBBP7-002 protein_coding Homo_sapiens 0 737
ENST00000465244 RBBP7-011 retained_intron Homo_sapiens 0 689
ENST00000468092 RBBP7-013 protein_coding Homo_sapiens 0 479
ENST00000481586 RBBP7-009 retained_intron Homo_sapiens 0 555
ENST00000485153 TXLNG-002 processed_transcript Homo_sapiens 0 270
ENST00000486166 RBBP7-001 retained_intron Homo_sapiens 0 604
ENST00000493145 RBBP7-012 protein_coding Homo_sapiens 0 241

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