C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma binding protein 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380084 RBBP7-008 ENSG00000102054 9606 - X:16844654-16869886 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380084
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380084 10.279±0.00 20.065±0.00 9.358±0.00 12.045±0.00 8.760±5.94 7.768±6.06 7.608±4.06 6.466±0.00 7.956±0.00 11.368±0.00 22.341±10.08 27.885±2.51 31.307±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0003723 IEA RNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006260 IEA DNA replication
GO:0006325 TAS chromatin organization
GO:0006334 TAS nucleosome assembly
GO:0006351 IEA transcription, DNA-templated
GO:0007275 TAS multicellular organismal development
GO:0008283 TAS cell proliferation
GO:0016581 IDA NuRD complex
GO:0030308 IDA negative regulation of cell growth
GO:0034080 TAS CENP-A containing nucleosome assembly
GO:0035098 IDA ESC/E(Z) complex
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0070370 IDA cellular heat acclimation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033720 Rbbp7-001 protein_coding Mus_musculus 0 2309
ENSMUST00000112327 Rbbp7-003 protein_coding Mus_musculus 0 1725
ENSMUST00000112326 Rbbp7-002 protein_coding Mus_musculus 0 1622
ENSMUST00000118873 Gm6382-001 processed_pseudogene Mus_musculus 0 1303
ENSMUST00000138791 Rbbp7-005 protein_coding Mus_musculus 0 935
ENSDART00000130326 rbb4-201 protein_coding Danio_rerio 0 758
ENSDART00000048144 rbb4-001 protein_coding Danio_rerio 0 758
ENSMUST00000143681 Rbbp7-004 protein_coding Mus_musculus 0 333
ENSDART00000132807 rbb4-002 processed_transcript Danio_rerio 0 257

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