C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma binding protein 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380087 RBBP7-006 ENSG00000102054 9606 - X:16844341-16870414 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000380087
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000380087 3.909±0.00 4.182±0.01 4.135±0.00 3.502±0.00 3.319±0.00 13.886±0.00 6.222±0.00 7.391±0.00 28.331±18.28 8.430±0.32 8.668±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006260 IEA DNA replication
GO:0006325 TAS chromatin organization
GO:0006334 TAS nucleosome assembly
GO:0006351 IEA transcription, DNA-templated
GO:0007275 TAS multicellular organismal development
GO:0008283 TAS cell proliferation
GO:0016581 IDA NuRD complex
GO:0030308 IDA negative regulation of cell growth
GO:0034080 TAS CENP-A containing nucleosome assembly
GO:0035098 IDA ESC/E(Z) complex
GO:0070370 IDA cellular heat acclimation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033720 Rbbp7-001 protein_coding Mus_musculus 0 2780
ENSMUST00000112326 Rbbp7-002 protein_coding Mus_musculus 0 1814
ENSMUST00000112327 Rbbp7-003 protein_coding Mus_musculus 0 1725
ENSMUST00000118873 Gm6382-001 processed_pseudogene Mus_musculus 0 1303
ENSMUST00000138791 Rbbp7-005 protein_coding Mus_musculus 0 933
ENSDART00000130326 rbb4-201 protein_coding Danio_rerio 0 760
ENSDART00000048144 rbb4-001 protein_coding Danio_rerio 0 760
ENSMUST00000143681 Rbbp7-004 protein_coding Mus_musculus 0 333
ENSMUST00000131463 Txlng-006 retained_intron Mus_musculus 0 272
ENSMUST00000112316 Txlng-002 protein_coding Mus_musculus 0 272
ENSMUST00000041370 Txlng-001 protein_coding Mus_musculus 0 272
ENSDART00000132807 rbb4-002 processed_transcript Danio_rerio 0 257

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