C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: slit homolog 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000033967 Slit2-003 ENSMUSG00000031558 10090 + 5:47983155-48304396 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000033967
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000033967 0.380±0.17 0.455±0.39 0.388±0.03 1.783±0.00 1.582±0.47 0.501±0.23 0.443±0.20 1.160±0.50 0.078±0.01 3.073±0.53 0.026±0.01 1.242±0.81 0.387±0.24 0.121±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OP CIL_0002OP_0002 CGP 5:45697181-48306282
CIL_0002OO CIL_0002OO_0002 CGP 5:47983155-48388756

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001656 IMP metanephros development
GO:0001701 IMP in utero embryonic development
GO:0005102 TAS receptor binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0007409 IDA axonogenesis
GO:0007411 IGI axon guidance
GO:0008285 IGI negative regulation of cell proliferation
GO:0010629 IGI negative regulation of gene expression
GO:0016337 IGI single organismal cell-cell adhesion
GO:0021772 IGI olfactory bulb development
GO:0022029 IGI telencephalon cell migration
GO:0030517 IDA negative regulation of axon extension
GO:0031290 IGI retinal ganglion cell axon guidance
GO:0033563 IGI dorsal/ventral axon guidance
GO:0045499 IMP chemorepellent activity
GO:0048812 IGI neuron projection morphogenesis
GO:0050919 IMP negative chemotaxis
GO:0060603 IGI mammary gland duct morphogenesis
GO:0060763 IMP mammary duct terminal end bud growth

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000273739 SLIT2-004 protein_coding Homo_sapiens 0 3151
ENST00000503823 SLIT2-002 protein_coding Homo_sapiens 0 3358
ENST00000503837 SLIT2-003 protein_coding Homo_sapiens 0 3256
ENST00000504154 SLIT2-001 protein_coding Homo_sapiens 0 3206
ENST00000508541 SLIT2-005 retained_intron Homo_sapiens 0 1016
ENST00000508824 SLIT2-006 protein_coding Homo_sapiens 0 468
ENST00000509394 SLIT2-009 processed_transcript Homo_sapiens 0 553
ENST00000509941 SLIT2-010 protein_coding Homo_sapiens 0 606
ENST00000511508 SLIT2-012 protein_coding Homo_sapiens 0 387
ENST00000512993 SLIT2-011 protein_coding Homo_sapiens 0 283
ENST00000622093 SLIT2-201 protein_coding Homo_sapiens 0 3262

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