C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: slit homolog 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000503837 SLIT2-003 ENSG00000145147 9606 + 4:20253816-20619183 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartLungMuscleOvaryTestisENST00000503837
Transcript ID Colon Heart Lung Muscle Ovary Testis
ENST00000503837 0.393±0.00 0.186±0.00 3.146±0.00 0.961±0.00 0.191±0.00 0.117±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OP CIL_0002OP_0001 CGP 4:17841199-20620561
CIL_0002OO CIL_0002OO_0001 CGP 4:20253260-20752907

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174313 Slit2-002 protein_coding Mus_musculus 0 5982
ENSMUST00000170109 Slit2-001 protein_coding Mus_musculus 0 5904
ENSMUST00000173702 Slit2-007 protein_coding Mus_musculus 0 5871
ENSMUST00000173107 Slit2-008 protein_coding Mus_musculus 0 5794
ENSMUST00000174421 Slit2-006 protein_coding Mus_musculus 0 5740
ENSMUST00000033967 Slit2-003 nonsense_mediated_decay Mus_musculus 0 3256
ENSMUST00000172484 Slit2-005 retained_intron Mus_musculus 0 1219
ENSMUST00000174487 Slit2-016 processed_transcript Mus_musculus 0 1125
ENSMUST00000172824 Slit2-013 processed_transcript Mus_musculus 0 946
ENSMUST00000173686 Slit2-018 nonsense_mediated_decay Mus_musculus 0 902
ENSMUST00000173671 Slit2-004 processed_transcript Mus_musculus 0 686
ENSMUST00000172998 Slit2-020 retained_intron Mus_musculus 0 675
ENSMUST00000172493 Slit2-014 protein_coding Mus_musculus 0 619
ENSMUST00000173926 Slit2-010 processed_transcript Mus_musculus 0 580
ENSMUST00000173774 Slit2-011 processed_transcript Mus_musculus 0 514
ENSMUST00000174658 Slit2-009 nonsense_mediated_decay Mus_musculus 0 420
ENSMUST00000174061 Slit2-019 retained_intron Mus_musculus 0 383
ENSMUST00000173303 Slit2-012 retained_intron Mus_musculus 0 333

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