C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: matrix metallopeptidase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034187 Mmp2-201 ENSMUSG00000031740 10090 + 8:92827328-92853417 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034187
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034187 135.853±68.65 11.109±0.75 143.946±12.57 6.292±3.64 189.682±46.05 59.395±7.64 31.927±2.44 8.291±0.98 3.404±1.71 57.402±6.83 9.793±1.72 86.906±23.63 8.473±5.18 1.898±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098A CIL_00098A_0002 VISTA 8:92245404-92846474
CIL_000987 CIL_000987_0002 VISTA 8:92255075-92855722
CIL_0007WY CIL_0007WY_0002 VISTA 8:92348089-92949598
CIL_000988 CIL_000988_0002 VISTA 8:92435258-93036114
CIL_00098D CIL_00098D_0002 VISTA 8:92442867-93044200
CIL_0001GQ CIL_0001GQ_0002 CGP 8:92674288-92853417
CIL_0005P6 CIL_0005P6_0002 CGP 8:92827328-92919279

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0001666 IDA response to hypoxia
GO:0001955 IGI blood vessel maturation
GO:0001957 IGI intramembranous ossification
GO:0004222 IDA metalloendopeptidase activity
GO:0005515 IEA protein binding
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 ISO extracellular space
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005886 IDA plasma membrane
GO:0006508 IEA proteolysis
GO:0007566 IDA embryo implantation
GO:0008270 IEA zinc ion binding
GO:0030017 IDA sarcomere
GO:0030574 IMP collagen catabolic process
GO:0035987 IEA endodermal cell differentiation
GO:0045089 IDA positive regulation of innate immune response
GO:0048705 IGI skeletal system morphogenesis
GO:0060325 IGI face morphogenesis
GO:0060346 IGI bone trabecula formation
GO:0071230 IDA cellular response to amino acid stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219070 MMP2-001 protein_coding Homo_sapiens 0 2728
ENST00000437642 MMP2-003 protein_coding Homo_sapiens 0 2383
ENST00000543485 MMP2-002 protein_coding Homo_sapiens 0 2379
ENST00000564864 MMP2-004 protein_coding Homo_sapiens 0 883
ENST00000566564 MMP2-005 nonsense_mediated_decay Homo_sapiens 2e-31 139
ENST00000568715 MMP2-007 protein_coding Homo_sapiens 0 586
ENST00000570283 MMP2-006 protein_coding Homo_sapiens 0 870
ENST00000570308 MMP2-008 protein_coding Homo_sapiens 0 2555

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