C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: matrix metallopeptidase 2 (gelatinase A, 72kDa gelatinase, 72kDa type IV collagenase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543485 MMP2-002 ENSG00000087245 9606 + 16:55480533-55505525 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000543485
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000543485 194.921±0.00 9.945±0.00 0.930±0.00 0.927±0.00 27.068±6.17 7.315±0.00 2.005±0.00 4.355±3.42 9.909±0.00 5.236±0.00 1.374±0.00 23.294±11.82 89.904±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0002 UCNEbase 16:51906374-55391377
CIL_00098A CIL_00098A_0001 VISTA 16:54889273-55490371
CIL_000987 CIL_000987_0001 VISTA 16:54906681-55507962
CIL_0007WY CIL_0007WY_0001 VISTA 16:54995377-55596848
CIL_000988 CIL_000988_0001 VISTA 16:55084120-55684969
CIL_00098D CIL_00098D_0001 VISTA 16:55090504-55691826
CIL_0001GQ CIL_0001GQ_0001 CGP 16:55323760-55506691
CIL_0005P6 CIL_0005P6_0001 CGP 16:55389700-55586670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0004222 IEA metalloendopeptidase activity
GO:0004252 TAS serine-type endopeptidase activity
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0005634 IEA nucleus
GO:0006508 IEA proteolysis
GO:0008237 IEA metallopeptidase activity
GO:0008270 IEA zinc ion binding
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IEA extracellular matrix
GO:0035987 IEP endodermal cell differentiation
GO:0044267 TAS cellular protein metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034187 Mmp2-201 protein_coding Mus_musculus 0 2379

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