C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell adhesion molecule 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000542447 CADM1-002 ENSG00000182985 9606 - 11:115173625-115504523 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000542447
Transcript ID Bladder Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000542447 0.866±0.00 5.771±2.07 1.406±0.00 0.939±0.00 3.305±0.00 1.299±0.00 7.738±1.34 2.124±0.00 2.436±0.30 5.374±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JB CIL_0007JB_0003 UCNEbase 11:114879628-115317708

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 ISS receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005886 IDA plasma membrane
GO:0005911 ISS cell-cell junction
GO:0006915 IEA apoptotic process
GO:0007156 ISS homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007157 ISS heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007283 IEA spermatogenesis
GO:0008037 ISS cell recognition
GO:0016021 IEA integral component of membrane
GO:0016323 ISS basolateral plasma membrane
GO:0030154 IEA cell differentiation
GO:0030165 ISS PDZ domain binding
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0042271 ISS susceptibility to natural killer cell mediated cytotoxicity
GO:0042803 ISS protein homodimerization activity
GO:0045216 TAS cell-cell junction organization
GO:0045954 ISS positive regulation of natural killer cell mediated cytotoxicity
GO:0050715 IDA positive regulation of cytokine secretion
GO:0051606 ISS detection of stimulus
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034581 Cadm1-006 protein_coding Mus_musculus 0 1736
ENSMUST00000143026 Cadm1-005 protein_coding Mus_musculus 0 1696
ENSMUST00000152459 Cadm1-004 protein_coding Mus_musculus 0 1544
ENSMUST00000114548 Cadm1-001 protein_coding Mus_musculus 0 1541
ENSMUST00000114547 Cadm1-003 protein_coding Mus_musculus 0 1535
ENSMUST00000085909 Cadm1-002 protein_coding Mus_musculus 0 1535
ENSMUST00000124073 Cadm1-007 retained_intron Mus_musculus 0 1406
ENSMUST00000151624 Cadm1-008 processed_transcript Mus_musculus 0 1362
ENSMUST00000148925 Cadm1-009 retained_intron Mus_musculus 0 381

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