C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: anterior pharynx defective 1b homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000034934 Aph1b-001 ENSMUSG00000032375 10090 - 9:66775202-66795490 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034934
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034934 2.267±0.67 4.055±2.32 3.397±0.30 5.361±3.24 1.670±0.32 2.616±0.79 1.154±0.38 3.218±0.34 0.504±0.18 3.467±0.39 0.590±0.16 3.468±2.30 1.398±0.61 0.457±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098V CIL_00098V_0002 VISTA 9:66700483-67304558
CIL_00094O CIL_00094O_0002 VISTA 9:66740666-67343521

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004175 IGI endopeptidase activity
GO:0005886 TAS plasma membrane
GO:0006508 IGI proteolysis
GO:0007219 IEA Notch signaling pathway
GO:0016021 IEA integral component of membrane
GO:0016485 IEA protein processing
GO:0043085 IEA positive regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261879 APH1B-001 protein_coding Homo_sapiens 0 913
ENST00000380340 APH1B-003 nonsense_mediated_decay Homo_sapiens 0 734
ENST00000380343 APH1B-002 protein_coding Homo_sapiens 0 313
ENST00000558631 APH1B-007 retained_intron Homo_sapiens 0 305
ENST00000559823 APH1B-009 processed_transcript Homo_sapiens 5e-37 158
ENST00000559971 APH1B-004 nonsense_mediated_decay Homo_sapiens 0 761
ENST00000560353 APH1B-005 protein_coding Homo_sapiens 0 566
ENST00000560716 APH1B-008 processed_transcript Homo_sapiens 0 339
ENST00000560890 APH1B-006 protein_coding Homo_sapiens 0 658

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