C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin VI
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035889 Myo6-001 ENSMUSG00000033577 10090 + 9:80165031-80311729 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLungMuscleOvaryPlacentaTestisENSMUST00000035889
Transcript ID Adrenal Brain Colon Lung Muscle Ovary Placenta Testis
ENSMUST00000035889 2.902±0.00 5.761±0.00 5.547±0.68 4.829±2.10 0.592±0.18 5.530±2.49 0.841±0.00 0.903±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006PS CIL_0006PS_0002 CGP 9:80066903-80311729
CIL_0006PV CIL_0006PV_0002 CGP 9:80165031-80465481

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 IEA ruffle
GO:0003774 IEA motor activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005654 IEA nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005886 IPI plasma membrane
GO:0005902 IEA microvillus
GO:0006605 IPI protein targeting
GO:0006897 IMP endocytosis
GO:0007268 IMP synaptic transmission
GO:0007416 IMP synapse assembly
GO:0007605 IMP sensory perception of sound
GO:0007626 IMP locomotory behavior
GO:0008152 IEA metabolic process
GO:0012506 IPI vesicle membrane
GO:0014047 IMP glutamate secretion
GO:0016020 IEA membrane
GO:0016023 IEA cytoplasmic membrane-bounded vesicle
GO:0016358 IMP dendrite development
GO:0016459 IEA myosin complex
GO:0016591 IEA DNA-directed RNA polymerase II, holoenzyme
GO:0030139 IEA endocytic vesicle
GO:0030330 IEA DNA damage response, signal transduction by p53 class mediator
GO:0030424 IDA axon
GO:0031941 IEA filamentous actin
GO:0031965 IEA nuclear membrane
GO:0032587 IEA ruffle membrane
GO:0042472 IMP inner ear morphogenesis
GO:0042491 IMP auditory receptor cell differentiation
GO:0042493 IEA response to drug
GO:0043025 IDA neuronal cell body
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043234 IEA protein complex
GO:0045177 IEA apical part of cell
GO:0045202 ISO synapse
GO:0045334 IEA clathrin-coated endocytic vesicle
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048167 IMP regulation of synaptic plasticity
GO:0048471 ISO perinuclear region of cytoplasm
GO:0048839 IMP inner ear development
GO:0051015 ISO actin filament binding
GO:0051046 IEA regulation of secretion
GO:0070062 IEA extracellular vesicular exosome
GO:0071257 IMP cellular response to electrical stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369975 MYO6-003 protein_coding Homo_sapiens 0 4440
ENST00000369977 MYO6-002 protein_coding Homo_sapiens 0 3742
ENST00000369981 MYO6-201 protein_coding Homo_sapiens 0 3740
ENST00000369985 MYO6-001 protein_coding Homo_sapiens 0 4608
ENST00000430435 MYO6-005 protein_coding Homo_sapiens 0 219
ENST00000462633 MYO6-004 processed_transcript Homo_sapiens 0 568
ENST00000615563 MYO6-202 protein_coding Homo_sapiens 0 4608

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