C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: COP9 signalosome subunit 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000354371 COPS8-001 ENSG00000198612 9606 + 2:237085312-237100466 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverLungOvaryPlacentaENST00000354371
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000354371 1.005±0.00 0.703±0.00 2.972±1.23 0.851±0.49 0.450±0.00 1.295±0.41 0.725±0.35 1.048±0.18 1.668±0.00 1.268±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000XT CIL_0000XT_0001 CGP 2:236567787-237100466
CIL_0008L9 CIL_0008L9_0001 VISTA 2:237013177-237616630
CIL_0000XQ CIL_0000XQ_0001 CGP 2:237085312-237414375

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0007250 IMP activation of NF-kappaB-inducing kinase activity
GO:0008180 IDA COP9 signalosome
GO:0008285 IMP negative regulation of cell proliferation
GO:0010388 IDA cullin deneddylation
GO:0048471 IDA perinuclear region of cytoplasm
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036153 Cops8-001 protein_coding Mus_musculus 0 898
ENSMUST00000189309 Cops8-004 retained_intron Mus_musculus 0 721
ENSMUST00000191510 Cops8-002 retained_intron Mus_musculus 0 662
ENSMUST00000186750 Cops8-008 protein_coding Mus_musculus 0 549
ENSMUST00000190700 Cops8-005 retained_intron Mus_musculus 0 243
ENSMUST00000186152 Cops8-009 processed_transcript Mus_musculus 0 239

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