C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036647 Ctdspl2-001 ENSMUSG00000033411 10090 + 2:121956001-122013642 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036647
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036647 0.888±0.34 0.912±0.00 1.372±0.00 2.826±0.00 0.599±0.14 0.403±0.12 0.666±0.10 0.992±0.34 2.801±1.27 1.032±0.40 0.332±0.18 0.940±0.39 2.910±1.75 1.448±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000686 CIL_000686_0002 CGP 2:121956001-122056598

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004721 IEA phosphoprotein phosphatase activity
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016311 IEA dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260327 CTDSPL2-001 protein_coding Homo_sapiens 0 5417
ENST00000412509 RP11-402K9.1-001 processed_pseudogene Homo_sapiens 0 952
ENST00000558373 CTDSPL2-003 protein_coding Homo_sapiens 0 4065
ENST00000558791 CTDSPL2-010 protein_coding Homo_sapiens 0 750
ENST00000558966 CTDSPL2-002 protein_coding Homo_sapiens 0 2579
ENST00000558968 CTDSPL2-006 protein_coding Homo_sapiens 0 429
ENST00000559175 CTDSPL2-004 retained_intron Homo_sapiens 0 2828
ENST00000559738 CTDSPL2-009 processed_transcript Homo_sapiens 0 560
ENST00000559793 CTDSPL2-005 protein_coding Homo_sapiens 0 540
ENST00000560620 CTDSPL2-008 nonsense_mediated_decay Homo_sapiens 0 375
ENST00000560834 CTDSPL2-011 processed_transcript Homo_sapiens 0 492
ENST00000561189 CTDSPL2-007 processed_transcript Homo_sapiens 0 409

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