C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000260327 CTDSPL2-001 ENSG00000137770 9606 + 15:44427234-44529038 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260327
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260327 4.848±0.00 2.696±0.00 2.345±0.00 0.879±0.00 3.135±0.25 2.032±0.46 0.848±0.06 1.362±0.00 1.308±0.79 4.795±0.00 1.157±0.00 2.307±0.86 1.275±0.84 1.799±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QJ CIL_0004QJ_0002 CGP 15:44288729-44529038
CIL_000686 CIL_000686_0001 CGP 15:44427234-44563029

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004721 IEA phosphoprotein phosphatase activity
GO:0005515 IEA protein binding
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036647 Ctdspl2-001 protein_coding Mus_musculus 0 5417
ENSMUST00000140570 Ctdspl2-002 processed_transcript Mus_musculus 0 5147
ENSMUST00000110578 Ctdspl2-003 protein_coding Mus_musculus 0 4968
ENSMUST00000110572 Ctdspl2-006 protein_coding Mus_musculus 0 4065
ENSMUST00000110574 Ctdspl2-005 protein_coding Mus_musculus 0 2274
ENSMUST00000128883 Ctdspl2-004 processed_transcript Mus_musculus 0 1587
ENSMUST00000131258 Ctdspl2-008 retained_intron Mus_musculus 0 1308
ENSMUST00000127265 Ctdspl2-009 retained_intron Mus_musculus 0 1024
ENSMUST00000138920 Ctdspl2-007 retained_intron Mus_musculus 0 725

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