C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000558966 CTDSPL2-002 ENSG00000137770 9606 + 15:44427793-44524543 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLungOvaryTestisENST00000558966
Transcript ID Brain Lung Ovary Testis
ENST00000558966 2.007±0.00 5.912±0.00 4.381±0.00 3.967±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QJ CIL_0004QJ_0002 CGP 15:44288729-44529038
CIL_000686 CIL_000686_0001 CGP 15:44427234-44563029

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004721 IEA phosphoprotein phosphatase activity
GO:0005515 IEA protein binding
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036647 Ctdspl2-001 protein_coding Mus_musculus 0 2579
ENSMUST00000110578 Ctdspl2-003 protein_coding Mus_musculus 0 2558
ENSMUST00000140570 Ctdspl2-002 processed_transcript Mus_musculus 0 2553
ENSMUST00000110574 Ctdspl2-005 protein_coding Mus_musculus 0 2289
ENSMUST00000110572 Ctdspl2-006 protein_coding Mus_musculus 0 1574
ENSMUST00000128883 Ctdspl2-004 processed_transcript Mus_musculus 0 1397
ENSMUST00000131258 Ctdspl2-008 retained_intron Mus_musculus 0 1118
ENSMUST00000127265 Ctdspl2-009 retained_intron Mus_musculus 0 1024
ENSMUST00000138920 Ctdspl2-007 retained_intron Mus_musculus 0 682

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