C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat domain, phosphoinositide interacting 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036872 Wipi2-001 ENSMUSG00000029578 10090 + 5:142629542-142670588 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036872
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036872 15.917±0.65 16.669±2.69 11.948±2.81 12.382±1.57 12.230±2.56 15.741±1.57 6.827±0.67 19.775±1.85 12.374±2.62 12.291±2.57 4.739±0.88 19.682±7.83 9.149±2.38 8.204±3.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M3 CIL_0002M3_0002 CGP 5:142629542-142722490

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 ISS autophagic vacuole assembly
GO:0000407 IEA pre-autophagosomal structure
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005776 IEA autophagic vacuole
GO:0005829 ISS cytosol
GO:0032266 ISS phosphatidylinositol-3-phosphate binding
GO:0034045 ISS pre-autophagosomal structure membrane
GO:0043234 IEA protein complex
GO:0080025 ISS phosphatidylinositol-3,5-bisphosphate binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000288828 WIPI2-001 protein_coding Homo_sapiens 0 1301
ENST00000382384 WIPI2-007 protein_coding Homo_sapiens 0 1417
ENST00000401525 WIPI2-002 protein_coding Homo_sapiens 0 1485
ENST00000404704 WIPI2-008 protein_coding Homo_sapiens 0 1280
ENST00000466014 WIPI2-003 retained_intron Homo_sapiens 0 1301
ENST00000471851 WIPI2-006 retained_intron Homo_sapiens 0 414
ENST00000480238 WIPI2-011 processed_transcript Homo_sapiens 0 438
ENST00000484262 WIPI2-005 protein_coding Homo_sapiens 0 1140
ENST00000485854 WIPI2-010 processed_transcript Homo_sapiens 0 289
ENST00000488359 WIPI2-012 processed_transcript Homo_sapiens 0 449
ENST00000496867 WIPI2-009 processed_transcript Homo_sapiens 0 660
ENST00000571275 MYH11-008 retained_intron Homo_sapiens 0.0003 53
ENST00000576164 MYH11-009 retained_intron Homo_sapiens 0.0004 53
ENST00000593141 RP11-703I16.2-001 processed_pseudogene Homo_sapiens 0 292

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