C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAN binding protein 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389118 RANBP17-005 ENSG00000204764 9606 + 5:170861932-171298858 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastOvaryPlacentaTestisENST00000389118
Transcript ID Adrenal Brain Breast Ovary Placenta Testis
ENST00000389118 0.119±0.00 0.111±0.00 0.101±0.00 0.189±0.00 0.205±0.00 0.899±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SG CIL_0008SG_0001 VISTA 5:170690333-171291455
CIL_00098H CIL_00098H_0001 VISTA 5:170731788-171333093
CIL_000977 CIL_000977_0001 VISTA 5:170744249-171345366
CIL_00088M CIL_00088M_0001 VISTA 5:170856489-171457417

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0005525 NAS GTP binding
GO:0005643 NAS nuclear pore
GO:0005737 IEA cytoplasm
GO:0006606 NAS protein import into nucleus
GO:0006886 IEA intracellular protein transport
GO:0008536 IEA Ran GTPase binding
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000129179 Ranbp17-002 nonsense_mediated_decay Mus_musculus 0 2313
ENSMUST00000102815 Ranbp17-001 protein_coding Mus_musculus 0 2145
ENSMUST00000037522 Ranbp17-003 protein_coding Mus_musculus 0 1808
ENSMUST00000147751 Ranbp17-005 protein_coding Mus_musculus 0 800
ENSMUST00000154808 Ranbp17-004 processed_transcript Mus_musculus 0 564

Loading