C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: RAN binding protein 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520864 RANBP17-003 ENSG00000204764 9606 + 5:170862035-171207903 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonLiverOvaryENST00000520864
Transcript ID Breast Colon Liver Ovary
ENST00000520864 0.546±0.00 1.080±0.00 0.396±0.00 0.426±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SG CIL_0008SG_0001 VISTA 5:170690333-171291455
CIL_00098H CIL_00098H_0001 VISTA 5:170731788-171333093
CIL_000977 CIL_000977_0001 VISTA 5:170744249-171345366
CIL_00088M CIL_00088M_0001 VISTA 5:170856489-171457417

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005488 IEA binding
GO:0006886 IEA intracellular protein transport
GO:0008536 IEA Ran GTPase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000129179 Ranbp17-002 nonsense_mediated_decay Mus_musculus 0 1637
ENSMUST00000102815 Ranbp17-001 protein_coding Mus_musculus 0 1465
ENSMUST00000037522 Ranbp17-003 protein_coding Mus_musculus 0 1144
ENSMUST00000154808 Ranbp17-004 processed_transcript Mus_musculus 0 564
ENSMUST00000147751 Ranbp17-005 protein_coding Mus_musculus 0 542

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