C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre B cell leukemia homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038149 Pbx2-001 ENSMUSG00000034673 10090 + 17:34592263-34597400 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038149
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038149 7.105±2.91 10.149±4.90 8.281±1.00 9.507±4.41 5.501±2.21 8.111±0.80 2.424±0.35 6.336±0.64 4.915±2.30 9.971±0.89 3.069±0.49 7.537±2.05 9.923±3.07 0.985±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002RT CIL_0002RT_0002 CGP 17:34589806-34597400

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 IDA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IEA transcription factor binding
GO:0009954 IGI proximal/distal pattern formation
GO:0030326 IGI embryonic limb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000375050 PBX2-001 protein_coding Homo_sapiens 0 2154
ENST00000383270 PBX2-001 protein_coding Homo_sapiens 0 2148
ENST00000420432 PBX2-001 protein_coding Homo_sapiens 0 2154
ENST00000431537 PBX2-001 protein_coding Homo_sapiens 0 2154
ENST00000433552 PBX2-001 protein_coding Homo_sapiens 0 2154
ENST00000453487 PBX2-001 protein_coding Homo_sapiens 0 2154
ENST00000453961 PBX2-001 protein_coding Homo_sapiens 0 2154
ENST00000460101 PBX2-003 retained_intron Homo_sapiens 0 422
ENST00000460888 PBX2-003 retained_intron Homo_sapiens 0 422
ENST00000461053 PBX2-005 retained_intron Homo_sapiens 0 326
ENST00000461385 PBX2-002 retained_intron Homo_sapiens 0 1448
ENST00000461857 PBX2-005 retained_intron Homo_sapiens 0 326
ENST00000462393 PBX2-004 retained_intron Homo_sapiens 0 985
ENST00000466603 PBX2-003 retained_intron Homo_sapiens 0 422
ENST00000466640 PBX2-003 retained_intron Homo_sapiens 0 422
ENST00000471428 PBX2-005 retained_intron Homo_sapiens 0 326
ENST00000473198 PBX2-004 retained_intron Homo_sapiens 0 985
ENST00000476638 PBX2-003 retained_intron Homo_sapiens 0 422
ENST00000478678 PBX2-002 retained_intron Homo_sapiens 0 1448
ENST00000479667 PBX2-005 retained_intron Homo_sapiens 0 326
ENST00000480009 PBX2-004 retained_intron Homo_sapiens 0 985
ENST00000480254 PBX2-003 retained_intron Homo_sapiens 0 422
ENST00000480293 PBX2-002 retained_intron Homo_sapiens 0 1448
ENST00000485304 PBX2-002 retained_intron Homo_sapiens 0 1448
ENST00000487027 PBX2-005 retained_intron Homo_sapiens 0 326
ENST00000488105 PBX2-004 retained_intron Homo_sapiens 0 985
ENST00000489815 PBX2-002 retained_intron Homo_sapiens 0 1443
ENST00000491147 PBX2-005 retained_intron Homo_sapiens 0 326
ENST00000493219 PBX2P1-001 processed_pseudogene Homo_sapiens 0 1663
ENST00000494427 PBX2-003 retained_intron Homo_sapiens 0 422
ENST00000494630 PBX2-002 retained_intron Homo_sapiens 0 1448
ENST00000495300 PBX2-005 retained_intron Homo_sapiens 0 326
ENST00000496171 PBX2-004 retained_intron Homo_sapiens 0 985
ENST00000497588 PBX2-004 retained_intron Homo_sapiens 0 985
ENST00000498292 PBX2-002 retained_intron Homo_sapiens 0 1448
ENST00000498723 PBX2-004 retained_intron Homo_sapiens 0 985

Loading