C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-B-cell leukemia homeobox 2 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000493219 PBX2P1-001 ENSG00000244171 9606 + 3:143176327-143177617 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLungMuscleOvaryTestisENST00000493219
Transcript ID Breast Colon Heart Lung Muscle Ovary Testis
ENST00000493219 0.035±0.00 0.039±0.00 0.037±0.00 0.041±0.00 0.017±0.00 0.056±0.02 1.470±1.45

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038149 Pbx2-001 protein_coding Mus_musculus 0 1663
ENSMUST00000183827 Pbx2-005 protein_coding Mus_musculus 0 1437
ENSMUST00000173328 Pbx2-002 protein_coding Mus_musculus 0 1367
ENSMUST00000174532 Pbx2-003 protein_coding Mus_musculus 0 643
ENSDART00000129503 pbx1b-203 protein_coding Danio_rerio 0 643
ENSDART00000122028 pbx1b-201 protein_coding Danio_rerio 0 643
ENSDART00000125538 pbx1b-202 protein_coding Danio_rerio 0 643
ENSMUST00000081503 Pbx4-004 protein_coding Mus_musculus 0 442
ENSMUST00000134777 Pbx4-001 nonsense_mediated_decay Mus_musculus 3e-29 134
ENSMUST00000132899 Pbx4-003 nonsense_mediated_decay Mus_musculus 3e-29 134
ENSMUST00000131637 Pbx4-007 protein_coding Mus_musculus 1e-28 132
ENSMUST00000156319 Pbx4-002 nonsense_mediated_decay Mus_musculus 1e-28 132
ENSMUST00000151975 Pbx4-005 retained_intron Mus_musculus 1e-28 132

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