C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM and calponin homology domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038188 Limch1-001 ENSMUSG00000037736 10090 + 5:66968416-67057159 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverOvaryPlacentaENSMUST00000038188
Transcript ID Bladder Brain Breast Colon Kidney Liver Ovary Placenta
ENSMUST00000038188 0.242±0.00 2.243±1.44 0.602±0.09 0.285±0.05 1.911±0.52 0.058±0.03 0.915±0.00 0.168±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038J CIL_00038J_0002 CGP 5:66676098-67057159
CIL_00028N CIL_00028N_0003 CGP 5:66745835-67099301

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0031032 IEA actomyosin structure organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313860 LIMCH1-001 protein_coding Homo_sapiens 0 2492
ENST00000381753 LIMCH1-018 protein_coding Homo_sapiens 0 2473
ENST00000396595 LIMCH1-017 protein_coding Homo_sapiens 0 3107
ENST00000446625 LIMCH1-010 protein_coding Homo_sapiens 0 484
ENST00000503057 LIMCH1-013 protein_coding Homo_sapiens 0 1936
ENST00000508466 LIMCH1-019 protein_coding Homo_sapiens 0 2488
ENST00000508501 LIMCH1-002 protein_coding Homo_sapiens 0 3096
ENST00000509277 LIMCH1-015 protein_coding Homo_sapiens 0 1879
ENST00000509454 LIMCH1-016 protein_coding Homo_sapiens 0 568
ENST00000509638 LIMCH1-004 protein_coding Homo_sapiens 0 568
ENST00000511424 LIMCH1-026 protein_coding Homo_sapiens 0.000000000000003 86
ENST00000511496 LIMCH1-012 protein_coding Homo_sapiens 0 2881
ENST00000512632 LIMCH1-006 protein_coding Homo_sapiens 0 1797
ENST00000512820 LIMCH1-007 protein_coding Homo_sapiens 0 1315
ENST00000512946 LIMCH1-005 protein_coding Homo_sapiens 0 3086
ENST00000513024 LIMCH1-003 protein_coding Homo_sapiens 0 1315
ENST00000514096 LIMCH1-014 protein_coding Homo_sapiens 0 2375
ENST00000514190 LIMCH1-024 processed_transcript Homo_sapiens 3e-25 119

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