C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: desmocollin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000251081 DSC2-002 ENSG00000134755 9606 - 18:31065974-31102004 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000251081
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000251081 4.882±0.00 1.403±0.00 2.195±0.00 0.711±0.36 7.204±2.41 11.641±9.77 5.032±1.26 3.386±1.19 1.131±0.14 2.818±0.46 0.185±0.02 7.040±5.76 12.297±6.56 0.569±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EN CIL_0006EN_0001 CGP 18:30990008-31102415
CIL_0006EM CIL_0006EM_0001 CGP 18:31058840-31162856

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007155 TAS cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0014704 IDA intercalated disc
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030057 IDA desmosome
GO:0031410 IDA cytoplasmic vesicle
GO:0070062 IDA extracellular vesicular exosome
GO:0086005 IMP ventricular cardiac muscle cell action potential
GO:0086042 IMP cardiac muscle cell-cardiac muscle cell adhesion
GO:0086069 IMP bundle of His cell to Purkinje myocyte communication
GO:0086091 IMP regulation of heart rate by cardiac conduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039247 Dsc2-001 protein_coding Mus_musculus 0 1925
ENSMUST00000128464 Dsc2-003 nonsense_mediated_decay Mus_musculus 0 1825
ENSMUST00000075214 Dsc2-002 protein_coding Mus_musculus 0 1709
ENSMUST00000038710 Dsc1-201 protein_coding Mus_musculus 0 224
ENSMUST00000155407 Dsc2-004 protein_coding Mus_musculus 0.00000000007 75

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