C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: desmocollin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000257197 DSC1-001 ENSG00000134765 9606 - 18:31129236-31162856 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderKidneyMuscleOvaryPlacentaENST00000257197
Transcript ID Bladder Kidney Muscle Ovary Placenta
ENST00000257197 0.327±0.00 0.162±0.00 0.016±0.00 0.016±0.00 0.170±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006EM CIL_0006EM_0001 CGP 18:31058840-31162856
CIL_0002FH CIL_0002FH_0002 CGP 18:31129236-31357029

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0005921 TAS gap junction
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038710 Dsc1-201 protein_coding Mus_musculus 0 2505
ENSMUST00000128464 Dsc2-003 nonsense_mediated_decay Mus_musculus 2e-31 143
ENSMUST00000039247 Dsc2-001 protein_coding Mus_musculus 2e-31 143
ENSMUST00000155407 Dsc2-004 protein_coding Mus_musculus 0.00000000006 75
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000001 64
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00008 55

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