C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038868 Spata6-001 ENSMUSG00000034401 10090 + 4:111719984-111829142 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038868
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038868 4.498±0.58 2.220±0.20 9.697±0.80 2.568±0.19 3.397±0.57 1.589±0.56 1.479±0.29 4.034±0.47 0.852±0.36 5.699±0.38 0.941±0.28 3.091±1.39 2.472±1.43 75.095±13.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UZ CIL_0008UZ_0002 VISTA 4:111252851-111853446

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005576 IEA extracellular region
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008150 ND biological_process
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371841 SPATA6-005 protein_coding Homo_sapiens 0 780
ENST00000371843 SPATA6-002 protein_coding Homo_sapiens 0 1530
ENST00000371847 SPATA6-001 protein_coding Homo_sapiens 0 2220
ENST00000396199 SPATA6-201 protein_coding Homo_sapiens 0 1607
ENST00000463938 SPATA6-003 processed_transcript Homo_sapiens 0 773
ENST00000465990 SPATA6-009 processed_transcript Homo_sapiens 0 274
ENST00000471975 SPATA6-008 processed_transcript Homo_sapiens 0 693
ENST00000487543 SPATA6-007 nonsense_mediated_decay Homo_sapiens 0 704
ENST00000490850 SPATA6-004 processed_transcript Homo_sapiens 0 944
ENST00000603831 SPATA6-010 nonsense_mediated_decay Homo_sapiens 0 802

Loading