C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 4B (RBP1-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000349213 ARID4B-001 ENSG00000054267 9606 - 1:235166895-235328219 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartLungOvaryENST00000349213
Transcript ID Bladder Brain Heart Lung Ovary
ENST00000349213 1.394±0.00 3.389±0.00 0.404±0.00 5.167±0.00 1.990±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KF CIL_0006KF_0001 CGP 1:235109336-235161457
CIL_0000L1 CIL_0000L1_0002 CGP 1:235131634-235344532

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110536 Arid4b-004 protein_coding Mus_musculus 0 7060
ENSMUST00000039538 Arid4b-201 protein_coding Mus_musculus 0 6743
ENSMUST00000110534 Arid4b-001 protein_coding Mus_musculus 0 4680
ENSMUST00000129488 Arid4b-002 protein_coding Mus_musculus 0 2056
ENSMUST00000110533 Arid4b-003 protein_coding Mus_musculus 0 1951
ENSMUST00000149579 Arid4b-006 protein_coding Mus_musculus 0 1884
ENSMUST00000148941 Arid4b-005 processed_transcript Mus_musculus 0 1844
ENSMUST00000151151 Arid4b-009 processed_transcript Mus_musculus 0 612
ENSMUST00000155553 Arid4b-007 processed_transcript Mus_musculus 0 248
ENSDART00000128291 arid4a-201 protein_coding Danio_rerio 1.99993e-41 176
ENSDART00000103228 arid4a-002 protein_coding Danio_rerio 1.99993e-41 176
ENSDART00000064412 arid4a-001 protein_coding Danio_rerio 1.99993e-41 176
ENSDART00000151847 arid4a-003 protein_coding Danio_rerio 1.99993e-41 176
ENSMUST00000151182 Arid4b-008 processed_transcript Mus_musculus 4e-34 152

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