C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 4B (RBP1-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000264183 ARID4B-201 ENSG00000054267 9606 - 1:235166895-235328217 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000264183
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000264183 5.604±0.00 13.687±0.00 1.723±0.00 4.119±2.03 3.921±0.08 4.818±2.11 1.647±0.97 10.974±0.00 4.600±0.00 3.930±0.00 4.659±1.84 4.178±2.67 11.766±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KF CIL_0006KF_0001 CGP 1:235109336-235161457
CIL_0000L1 CIL_0000L1_0002 CGP 1:235131634-235344532

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006349 IEA regulation of gene expression by genetic imprinting
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007283 IEA spermatogenesis
GO:0008150 ND biological_process
GO:0034773 IEA histone H4-K20 trimethylation
GO:0036124 IEA histone H3-K9 trimethylation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0097368 IEA establishment of Sertoli cell barrier

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110534 Arid4b-001 protein_coding Mus_musculus 0 7143
ENSMUST00000039538 Arid4b-201 protein_coding Mus_musculus 0 4693
ENSMUST00000110536 Arid4b-004 protein_coding Mus_musculus 0 4689
ENSMUST00000129488 Arid4b-002 protein_coding Mus_musculus 0 2122
ENSMUST00000110533 Arid4b-003 protein_coding Mus_musculus 0 1951
ENSMUST00000149579 Arid4b-006 protein_coding Mus_musculus 0 1886
ENSMUST00000148941 Arid4b-005 processed_transcript Mus_musculus 0 1845
ENSMUST00000151151 Arid4b-009 processed_transcript Mus_musculus 0 612
ENSMUST00000155553 Arid4b-007 processed_transcript Mus_musculus 0 248
ENSDART00000128291 arid4a-201 protein_coding Danio_rerio 1.99993e-41 176
ENSDART00000103228 arid4a-002 protein_coding Danio_rerio 1.99993e-41 176
ENSDART00000064412 arid4a-001 protein_coding Danio_rerio 1.99993e-41 176
ENSDART00000151847 arid4a-003 protein_coding Danio_rerio 1.99993e-41 176
ENSMUST00000151182 Arid4b-008 processed_transcript Mus_musculus 4e-34 152
ENSDART00000130175 AP3B1 (1 of 2)-201 protein_coding Danio_rerio 0.00005 55

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