C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 50, member B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039605 Fam50b-201 ENSMUSG00000038246 10090 + 13:34734850-34747613 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungPlacentaTestisENSMUST00000039605
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Placenta Testis
ENSMUST00000039605 0.046±0.02 0.046±0.02 0.020±0.01 0.109±0.05 0.040±0.00 0.080±0.06 0.046±0.02 0.258±0.21 0.122±0.11 0.645±0.27 130.036±32.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y7 CIL_0007Y7_0002 VISTA 13:34527566-35128899
CIL_0003IP CIL_0003IP_0002 CGP 13:34627840-34747613
CIL_0003IQ CIL_0003IQ_0002 CGP 13:34734850-34902877

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000158526 FAM50A-002 protein_coding Homo_sapiens 0 479
ENST00000380272 FAM50B-001 protein_coding Homo_sapiens 0 1000
ENST00000380274 FAM50B-002 protein_coding Homo_sapiens 0 1000
ENST00000393600 FAM50A-001 protein_coding Homo_sapiens 0 719
ENST00000464419 FAM50A-005 retained_intron Homo_sapiens 0 479
ENST00000478509 FAM50A-004 retained_intron Homo_sapiens 3e-36 156
ENST00000481619 FAM50A-007 retained_intron Homo_sapiens 0 405
ENST00000490480 FAM50A-003 retained_intron Homo_sapiens 0 187
ENST00000494278 FAM50A-006 retained_intron Homo_sapiens 1e-36 156

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