C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribonuclease, RNase K
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040428 Rnasek-001 ENSMUSG00000093989 10090 - 11:70238124-70239842 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040428
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040428 171.639±55.46 204.548±33.10 81.039±14.63 64.930±22.32 109.297±28.01 87.482±17.77 71.861±26.07 240.825±27.01 64.581±23.63 81.579±13.91 98.858±5.94 92.726±38.70 86.541±19.75 60.385±22.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006SP CIL_0006SP_0003 CGP 11:70235206-70239830

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004521 IEA:ISS endoribonuclease activity
GO:0005575 ND cellular_component
GO:0009303 IEA:ISS rRNA transcription
GO:0016021 IEA integral component of membrane
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000402093 RNASEK-201 protein_coding Homo_sapiens 0 484
ENST00000546395 RNASEK-003 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000547302 RNASEK-C17orf49-004 protein_coding Homo_sapiens 0 213
ENST00000547863 RNASEK-C17orf49-002 retained_intron Homo_sapiens 0 459
ENST00000548577 RNASEK-001 protein_coding Homo_sapiens 0 484
ENST00000549393 RNASEK-004 protein_coding Homo_sapiens 0 351
ENST00000549775 RNASEK-C17orf49-001 retained_intron Homo_sapiens 0 484
ENST00000552039 RNASEK-007 protein_coding Homo_sapiens 0 459
ENST00000552176 RNASEK-011 retained_intron Homo_sapiens 0 353
ENST00000552321 RNASEK-005 nonsense_mediated_decay Homo_sapiens 0 353
ENST00000552842 RNASEK-006 protein_coding Homo_sapiens 0 411
ENST00000570898 RNASEK-008 protein_coding Homo_sapiens 0 374
ENST00000575822 RNASEK-009 retained_intron Homo_sapiens 4e-30 135
ENST00000593646 RNASEK-012 protein_coding Homo_sapiens 0 484
ENST00000607564 RNASEK-C17orf49-005 retained_intron Homo_sapiens 0 353

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