C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041705 Spata20-001 ENSMUSG00000020867 10090 - 11:94478904-94485348 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENSMUST00000041705
Transcript ID Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENSMUST00000041705 0.020±0.00 0.098±0.00 0.046±0.03 0.029±0.01 0.359±0.05 0.307±0.09 0.059±0.01 0.025±0.01 0.419±0.47 450.117±184.95

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0005576 IEA extracellular region
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008150 ND biological_process
GO:0008152 IEA metabolic process
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000006658 SPATA20-001 protein_coding Homo_sapiens 0 2355
ENST00000356488 SPATA20-004 protein_coding Homo_sapiens 0 2355
ENST00000393244 SPATA20-201 protein_coding Homo_sapiens 0 2355
ENST00000502911 SPATA20-010 nonsense_mediated_decay Homo_sapiens 0 702
ENST00000503063 SPATA20-008 retained_intron Homo_sapiens 0 1616
ENST00000503127 SPATA20-003 nonsense_mediated_decay Homo_sapiens 0 2355
ENST00000504265 SPATA20-022 retained_intron Homo_sapiens 0 564
ENST00000504271 SPATA20-012 retained_intron Homo_sapiens 0 449
ENST00000504334 SPATA20-002 nonsense_mediated_decay Homo_sapiens 0 1474
ENST00000505085 SPATA20-009 nonsense_mediated_decay Homo_sapiens 0 206
ENST00000505336 SPATA20-018 retained_intron Homo_sapiens 0 348
ENST00000505456 SPATA20-014 nonsense_mediated_decay Homo_sapiens 0 684
ENST00000505559 SPATA20-005 nonsense_mediated_decay Homo_sapiens 0 501
ENST00000505656 SPATA20-021 retained_intron Homo_sapiens 0 592
ENST00000508598 SPATA20-015 retained_intron Homo_sapiens 2e-37 159
ENST00000511347 SPATA20-020 nonsense_mediated_decay Homo_sapiens 0 926
ENST00000511605 SPATA20-013 retained_intron Homo_sapiens 5.99756e-43 178
ENST00000511845 SPATA20-017 retained_intron Homo_sapiens 0 207
ENST00000511937 SPATA20-006 processed_transcript Homo_sapiens 0 1616
ENST00000512181 SPATA20-007 retained_intron Homo_sapiens 0 534
ENST00000512416 SPATA20-019 retained_intron Homo_sapiens 0 521
ENST00000515526 SPATA20-016 retained_intron Homo_sapiens 1e-19 100
ENST00000515619 SPATA20-023 retained_intron Homo_sapiens 0 307
ENST00000619622 SPATA20-202 protein_coding Homo_sapiens 0 2355

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