C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393244 SPATA20-201 ENSG00000006282 9606 + 17:50547201-50555850 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverMuscleOvaryTestisENST00000393244
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Muscle Ovary Testis
ENST00000393244 3.646±0.00 11.517±0.00 12.602±0.00 9.610±6.90 3.067±0.00 8.492±0.00 4.851±0.00 8.073±0.00 8.970±0.00 33.960±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088W CIL_00088W_0001 VISTA 17:49956976-50560219
CIL_0004X2 CIL_0004X2_0002 CGP 17:50543058-50627474

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041705 Spata20-001 protein_coding Mus_musculus 0 2355
ENSMUST00000134332 Spata20-002 processed_transcript Mus_musculus 0 1474
ENSMUST00000136362 Spata20-005 processed_transcript Mus_musculus 0 499
ENSMUST00000151707 Spata20-004 processed_transcript Mus_musculus 0 351
ENSMUST00000125310 Spata20-003 processed_transcript Mus_musculus 0 257

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