C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000006658 SPATA20-001 ENSG00000006282 9606 + 17:50547089-50555852 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000006658
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000006658 5.262±0.00 6.983±0.00 5.165±3.82 1.690±0.00 5.625±3.59 11.272±0.00 2.197±0.00 8.387±0.00 1.450±0.00 10.534±6.03 9.398±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088W CIL_00088W_0001 VISTA 17:49956976-50560219
CIL_0004X2 CIL_0004X2_0002 CGP 17:50543058-50627474

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008152 IEA metabolic process
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041705 Spata20-001 protein_coding Mus_musculus 0 2355
ENSMUST00000134332 Spata20-002 processed_transcript Mus_musculus 0 1474
ENSMUST00000136362 Spata20-005 processed_transcript Mus_musculus 0 499
ENSMUST00000151707 Spata20-004 processed_transcript Mus_musculus 0 351
ENSMUST00000125310 Spata20-003 processed_transcript Mus_musculus 0 257

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