C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000503127 SPATA20-003 ENSG00000006282 9606 + 17:50547127-50555850 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverLungOvaryPlacentaENST00000503127
Transcript ID Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENST00000503127 3.519±0.00 3.073±0.00 6.094±0.00 3.060±0.00 1.464±0.00 5.303±0.00 12.014±2.99 7.539±4.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088W CIL_00088W_0001 VISTA 17:49956976-50560219
CIL_0004X2 CIL_0004X2_0002 CGP 17:50543058-50627474

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041705 Spata20-001 protein_coding Mus_musculus 0 2355
ENSMUST00000134332 Spata20-002 processed_transcript Mus_musculus 0 1474
ENSMUST00000136362 Spata20-005 processed_transcript Mus_musculus 0 499
ENSMUST00000151707 Spata20-004 processed_transcript Mus_musculus 0 351
ENSMUST00000125310 Spata20-003 processed_transcript Mus_musculus 0 257

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