C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spermatogenesis associated 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000356488 SPATA20-004 ENSG00000006282 9606 + 17:50547126-50555852 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartLungMuscleOvaryPlacentaTestisENST00000356488
Transcript ID Bladder Brain Heart Lung Muscle Ovary Placenta Testis
ENST00000356488 3.017±0.00 3.772±0.00 2.250±0.00 0.963±0.00 3.178±0.00 18.937±0.08 5.493±0.00 53.179±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088W CIL_00088W_0001 VISTA 17:49956976-50560219
CIL_0004X2 CIL_0004X2_0002 CGP 17:50543058-50627474

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005576 IEA extracellular region
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008152 IEA metabolic process
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041705 Spata20-001 protein_coding Mus_musculus 0 2355
ENSMUST00000134332 Spata20-002 processed_transcript Mus_musculus 0 1474
ENSMUST00000136362 Spata20-005 processed_transcript Mus_musculus 0 499
ENSMUST00000151707 Spata20-004 processed_transcript Mus_musculus 0 351
ENSMUST00000125310 Spata20-003 processed_transcript Mus_musculus 0 265

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