C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: VPS25 pseudogene 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000455691 VPS25P1-001 ENSG00000226755 9606 + 1:117549415-117549922 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000455691
Transcript ID Testis
ENST00000455691 0.135±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A1 CIL_0008A1_0001 VISTA 1:117312950-117913675
CIL_0008HM CIL_0008HM_0001 VISTA 1:117358424-117964281
CIL_00012T CIL_00012T_0002 CGP 1:117367449-117628372

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042477 Vps25-001 protein_coding Mus_musculus 0 411
ENSMUST00000128260 Ramp2-008 nonsense_mediated_decay Mus_musculus 0 411
ENSMUST00000121331 Vps25-004 protein_coding Mus_musculus 0 379
ENSMUST00000100414 Vps25-003 protein_coding Mus_musculus 0 375
ENSMUST00000007533 Vps25-002 protein_coding Mus_musculus 0 375
ENSMUST00000107280 Vps25-007 protein_coding Mus_musculus 0 259

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