C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type VII, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042792 Scn7a-001 ENSMUSG00000034810 10090 - 2:66673425-66784914 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042792
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042792 8.573±1.33 1.419±0.26 6.144±1.57 0.082±0.03 11.324±1.54 1.501±0.30 2.842±0.27 0.539±0.24 0.017±0.01 57.193±9.07 0.462±0.23 2.134±0.45 0.182±0.34 0.402±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CV CIL_0006CV_0002 CGP 2:66480080-66784914

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005248 IBA voltage-gated sodium channel activity
GO:0005272 IDA sodium channel activity
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0006936 IEA muscle contraction
GO:0019228 IBA neuronal action potential
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IEA sodium ion transmembrane transport
GO:0055078 IDA sodium ion homeostasis
GO:0086010 IBA membrane depolarization during action potential
GO:0097386 IDA glial cell projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283256 SCN2A-001 protein_coding Homo_sapiens 0 385
ENST00000303354 SCN9A-201 protein_coding Homo_sapiens 0 433
ENST00000375427 SCN2A-002 protein_coding Homo_sapiens 0 385
ENST00000375437 SCN2A-201 protein_coding Homo_sapiens 0 385
ENST00000409435 SCN9A-004 protein_coding Homo_sapiens 0 433
ENST00000409672 SCN9A-001 protein_coding Homo_sapiens 0 433
ENST00000409855 SCN7A-001 protein_coding Homo_sapiens 0 3860
ENST00000419992 SCN7A-002 protein_coding Homo_sapiens 0 1633
ENST00000424326 SCN7A-003 nonsense_mediated_decay Homo_sapiens 0 2475
ENST00000619410 SCN7A-201 protein_coding Homo_sapiens 0 3860
ENST00000621965 SCN7A-202 protein_coding Homo_sapiens 0 3855

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