C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006CV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169432-ENSG00000136546 CGP 9606 2:166195185-166494247
GeneTranscriptPositionBiotype
ENSG00000136546 (SCN7A)
sodium channel, voltage-gated, type VII, alpha subunit 		ENST00000409855 (SCN7A-001) 166403573-166486968 protein_coding
ENST00000419992 (SCN7A-002) 166432321-166494247 protein_coding
ENST00000424326 (SCN7A-003) 166405513-166486968 nonsense_mediated_decay
ENST00000441411 (SCN7A-004) 166456953-166494205 protein_coding
ENST00000497562 (SCN7A-005) 166461755-166465526 retained_intron
ENST00000619410 (SCN7A-201) 166403573-166486971 protein_coding
ENST00000621965 (SCN7A-202) 166403573-166486971 protein_coding
ENSG00000169432 (SCN9A)
sodium channel, voltage-gated, type IX, alpha subunit 		ENST00000303354 (SCN9A-201) 166195194-166375987 protein_coding
ENST00000409435 (SCN9A-004) 166198672-166311756 protein_coding
ENST00000409672 (SCN9A-001) 166195185-166375993 protein_coding
ENST00000452182 (SCN9A-003) 166281760-166306571 protein_coding
ENST00000454569 (SCN9A-002) 166281760-166306571 protein_coding
ENST00000472119 (SCN9A-006) 166302619-166305920 retained_intron
ENSG00000236107 (AC010127.3)
 ENST00000447809 (AC010127.3-001) 166081531-166301784 antisense
ENST00000595268 (AC010127.3-004) 166015680-166060458 antisense
ENST00000595647 (AC010127.3-003) 165957399-166171547 antisense
ENST00000597623 (AC010127.3-002) 165957430-166036385 antisense
ENST00000599041 (AC010127.3-005) 166036065-166171474 antisense
CIL_0006CV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000075316-ENSMUSG00000034810 CGP 10090 2:66480080-66784914
GeneTranscriptPositionBiotype
ENSMUSG00000034810 (Scn7a)
sodium channel, voltage-gated, type VII, alpha 		ENSMUST00000042792 (Scn7a-001) 66673425-66784914 protein_coding
ENSMUSG00000075316 (Scn9a)
sodium channel, voltage-gated, type IX, alpha 		ENSMUST00000100063 (Scn9a-201) 66480080-66634952 protein_coding
ENSMUST00000100064 (Scn9a-001) 66480080-66634952 protein_coding
ENSMUST00000112354 (Scn9a-002) 66483117-66634653 protein_coding
ENSMUST00000141603 (Scn9a-003) 66564634-66634962 retained_intron
ENSMUST00000151234 (Scn9a-004) 66540015-66543175 retained_intron
ENSMUST00000164384 (Scn9a-202) 66482091-66634653 protein_coding
ENSMUST00000169900 (Scn9a-203) 66482091-66634653 protein_coding
ENSMUSG00000081307 (Gm13627)
predicted gene 13627 		ENSMUST00000119700 (Gm13627-001) 66529414-66530746 processed_pseudogene
ENSMUSG00000087301 (Gm13629)
predicted gene 13629 		ENSMUST00000141149 (Gm13629-001) 66440880-66546026 antisense
ENSMUST00000152740 (Gm13629-002) 66440896-66511249 antisense
ENSMUSG00000088994 (Gm23046)
predicted gene, 23046 		ENSMUST00000158369 (Gm23046-201) 66602515-66602798 misc_RNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CV_0001ENSG00000136546ENST00000409855ENST00000419992ENST00000424326ENST00000441411ENST00000497562ENST00000619410ENST00000621965ENSG00000169432ENST00000303354ENST00000409435ENST00000409672ENST00000452182ENST00000454569ENST00000472119ENSG00000236107ENST00000447809ENST00000595268ENST00000595647ENST00000597623ENST00000599041CIL_0006CV_0002ENSMUSG00000034810ENSMUST00000042792ENSMUSG00000075316ENSMUST00000100063ENSMUST00000100064ENSMUST00000112354ENSMUST00000141603ENSMUST00000151234ENSMUST00000164384ENSMUST00000169900ENSMUSG00000081307ENSMUST00000119700ENSMUSG00000087301ENSMUST00000141149ENSMUST00000152740ENSMUSG00000088994ENSMUST00000158369
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CV_0001ENSG00000136546ENST00000409855ENST00000419992ENST00000424326ENST00000441411ENST00000619410ENST00000621965ENSG00000169432ENST00000303354ENST00000409435ENST00000409672ENST00000454569ENSG00000236107ENST00000447809CIL_0006CV_0002ENSMUSG00000034810ENSMUST00000042792ENSMUSG00000075316ENSMUST00000100063ENSMUST00000100064ENSMUST00000112354ENSMUST00000141603ENSMUST00000151234ENSMUST00000164384ENSMUST00000169900ENSMUSG00000081307ENSMUST00000119700ENSMUSG00000087301ENSMUST00000141149ENSMUST00000152740ENSMUSG00000088994ENSMUST00000158369
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136546 ENST00000409855 0.589±0.00 0.095±0.00 N/A 0.070±0.00 0.177±0.00 5.706±0.00 3.362±0.76 1.267±0.00 0.316±0.00 3.337±0.66 N/A 3.847±0.00 0.568±0.40 0.464±0.20
ENST00000419992 N/A N/A 0.124±0.00 N/A 1.437±0.00 N/A N/A 0.290±0.00 2.766±0.00 7.762±0.00 0.271±0.00 N/A N/A N/A
ENST00000424326 N/A N/A N/A 0.047±0.00 0.460±0.00 N/A N/A N/A N/A N/A 0.167±0.00 N/A N/A N/A
ENST00000441411 N/A N/A N/A N/A N/A N/A 5.915±0.00 0.712±0.00 N/A N/A 1.168±0.00 5.398±0.00 N/A N/A
ENST00000497562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619410 N/A N/A N/A 0.070±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.258±0.00 0.260±0.00
ENST00000621965 N/A N/A N/A 0.070±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 0.243±0.00
ENSG00000169432 ENST00000303354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.208±0.00 0.179±0.07 N/A
ENST00000409435 N/A N/A 0.133±0.00 N/A 0.351±0.00 1.358±0.00 N/A 1.619±0.00 0.509±0.00 0.083±0.00 N/A 0.240±0.00 N/A 1.428±0.00
ENST00000409672 0.242±0.00 0.374±0.00 N/A N/A 0.175±0.00 1.278±0.30 0.146±0.07 0.814±0.40 0.454±0.21 0.630±0.00 0.062±0.02 0.090±0.07 0.566±0.40 0.488±0.18
ENST00000452182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.120±0.00 N/A N/A N/A
ENST00000472119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000236107 ENST00000447809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.072±0.00 0.076±0.00 N/A N/A
ENST00000595268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034810 ENSMUST00000042792 8.573±1.33 1.419±0.26 6.144±1.57 0.082±0.03 11.324±1.54 1.501±0.30 2.842±0.27 0.539±0.24 0.017±0.01 57.193±9.07 0.462±0.23 2.134±0.45 0.182±0.34 0.402±0.14
ENSMUSG00000075316 ENSMUST00000100063 N/A 0.076±0.00 0.038±0.00 N/A N/A 0.045±0.00 N/A 0.020±0.01 0.005±0.01 N/A N/A 0.022±0.01 0.005±0.00 N/A
ENSMUST00000100064 N/A N/A 0.016±0.00 1.154±0.96 N/A N/A 0.020±0.00 0.046±0.00 0.001±0.00 N/A N/A 0.021±0.01 0.199±0.19 N/A
ENSMUST00000112354 N/A 0.042±0.02 N/A N/A 0.007±0.00 0.059±0.00 0.021±0.00 0.015±0.00 0.002±0.00 0.022±0.00 N/A 0.040±0.01 0.006±0.00 0.006±0.00
ENSMUST00000141603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A N/A N/A
ENSMUST00000151234 N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164384 N/A N/A N/A N/A N/A 0.110±0.02 0.022±0.00 0.040±0.00 0.001±0.00 0.003±0.00 N/A 0.012±0.00 N/A N/A
ENSMUST00000169900 N/A N/A N/A N/A N/A N/A N/A N/A 0.001±0.00 0.003±0.00 N/A 0.009±0.00 N/A N/A
ENSMUSG00000081307 ENSMUST00000119700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.08 N/A
ENSMUSG00000087301 ENSMUST00000141149 N/A N/A N/A 6.143±0.00 N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A
ENSMUST00000152740 N/A N/A N/A 4.933±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088994 ENSMUST00000158369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A

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