C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006CV_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000169432-ENSG00000136546 CGP 9606 2:166195185-166494247
GeneTranscriptPositionBiotype
ENSG00000136546 (SCN7A)
sodium channel, voltage-gated, type VII, alpha subunit 		ENST00000409855 (SCN7A-001) 166403573-166486968 protein_coding
ENST00000419992 (SCN7A-002) 166432321-166494247 protein_coding
ENST00000424326 (SCN7A-003) 166405513-166486968 nonsense_mediated_decay
ENST00000441411 (SCN7A-004) 166456953-166494205 protein_coding
ENST00000497562 (SCN7A-005) 166461755-166465526 retained_intron
ENST00000619410 (SCN7A-201) 166403573-166486971 protein_coding
ENST00000621965 (SCN7A-202) 166403573-166486971 protein_coding
ENSG00000169432 (SCN9A)
sodium channel, voltage-gated, type IX, alpha subunit 		ENST00000303354 (SCN9A-201) 166195194-166375987 protein_coding
ENST00000409435 (SCN9A-004) 166198672-166311756 protein_coding
ENST00000409672 (SCN9A-001) 166195185-166375993 protein_coding
ENST00000452182 (SCN9A-003) 166281760-166306571 protein_coding
ENST00000454569 (SCN9A-002) 166281760-166306571 protein_coding
ENST00000472119 (SCN9A-006) 166302619-166305920 retained_intron
ENSG00000236107 (AC010127.3)
 ENST00000447809 (AC010127.3-001) 166081531-166301784 antisense
ENST00000595268 (AC010127.3-004) 166015680-166060458 antisense
ENST00000595647 (AC010127.3-003) 165957399-166171547 antisense
ENST00000597623 (AC010127.3-002) 165957430-166036385 antisense
ENST00000599041 (AC010127.3-005) 166036065-166171474 antisense

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0006CV_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000075316-ENSMUSG00000034810 CGP 10090 2:66480080-66784914
GeneTranscriptPositionBiotype
ENSMUSG00000034810 (Scn7a)
sodium channel, voltage-gated, type VII, alpha 		ENSMUST00000042792 (Scn7a-001) 66673425-66784914 protein_coding
ENSMUSG00000075316 (Scn9a)
sodium channel, voltage-gated, type IX, alpha 		ENSMUST00000100063 (Scn9a-201) 66480080-66634952 protein_coding
ENSMUST00000100064 (Scn9a-001) 66480080-66634952 protein_coding
ENSMUST00000112354 (Scn9a-002) 66483117-66634653 protein_coding
ENSMUST00000141603 (Scn9a-003) 66564634-66634962 retained_intron
ENSMUST00000151234 (Scn9a-004) 66540015-66543175 retained_intron
ENSMUST00000164384 (Scn9a-202) 66482091-66634653 protein_coding
ENSMUST00000169900 (Scn9a-203) 66482091-66634653 protein_coding
ENSMUSG00000081307 (Gm13627)
predicted gene 13627 		ENSMUST00000119700 (Gm13627-001) 66529414-66530746 processed_pseudogene
ENSMUSG00000087301 (Gm13629)
predicted gene 13629 		ENSMUST00000141149 (Gm13629-001) 66440880-66546026 antisense
ENSMUST00000152740 (Gm13629-002) 66440896-66511249 antisense
ENSMUSG00000088994 (Gm23046)
predicted gene, 23046 		ENSMUST00000158369 (Gm23046-201) 66602515-66602798 misc_RNA

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CV_0001ENSG00000136546ENST00000409855ENST00000419992ENST00000424326ENST00000441411ENST00000497562ENST00000619410ENST00000621965ENSG00000169432ENST00000303354ENST00000409435ENST00000409672ENST00000452182ENST00000454569ENST00000472119ENSG00000236107ENST00000447809ENST00000595268ENST00000595647ENST00000597623ENST00000599041CIL_0006CV_0002ENSMUSG00000034810ENSMUST00000042792ENSMUSG00000075316ENSMUST00000100063ENSMUST00000100064ENSMUST00000112354ENSMUST00000141603ENSMUST00000151234ENSMUST00000164384ENSMUST00000169900ENSMUSG00000081307ENSMUST00000119700ENSMUSG00000087301ENSMUST00000141149ENSMUST00000152740ENSMUSG00000088994ENSMUST00000158369
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006CV_0001ENSG00000136546ENST00000409855ENST00000419992ENST00000424326ENST00000441411ENST00000619410ENST00000621965ENSG00000169432ENST00000303354ENST00000409435ENST00000409672ENST00000454569ENSG00000236107ENST00000447809CIL_0006CV_0002ENSMUSG00000034810ENSMUST00000042792ENSMUSG00000075316ENSMUST00000100063ENSMUST00000100064ENSMUST00000112354ENSMUST00000141603ENSMUST00000151234ENSMUST00000164384ENSMUST00000169900ENSMUSG00000081307ENSMUST00000119700ENSMUSG00000087301ENSMUST00000141149ENSMUST00000152740ENSMUSG00000088994ENSMUST00000158369
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000136546 ENST00000409855 0.589±0.00 0.095±0.00 N/A 0.070±0.00 0.177±0.00 5.706±0.00 3.362±0.76 1.267±0.00 0.316±0.00 3.337±0.66 N/A 3.847±0.00 0.568±0.40 0.464±0.20
ENST00000419992 N/A N/A 0.124±0.00 N/A 1.437±0.00 N/A N/A 0.290±0.00 2.766±0.00 7.762±0.00 0.271±0.00 N/A N/A N/A
ENST00000424326 N/A N/A N/A 0.047±0.00 0.460±0.00 N/A N/A N/A N/A N/A 0.167±0.00 N/A N/A N/A
ENST00000441411 N/A N/A N/A N/A N/A N/A 5.915±0.00 0.712±0.00 N/A N/A 1.168±0.00 5.398±0.00 N/A N/A
ENST00000497562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000619410 N/A N/A N/A 0.070±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.258±0.00 0.260±0.00
ENST00000621965 N/A N/A N/A 0.070±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.152±0.00 0.243±0.00
ENSG00000169432 ENST00000303354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.208±0.00 0.179±0.07 N/A
ENST00000409435 N/A N/A 0.133±0.00 N/A 0.351±0.00 1.358±0.00 N/A 1.619±0.00 0.509±0.00 0.083±0.00 N/A 0.240±0.00 N/A 1.428±0.00
ENST00000409672 0.242±0.00 0.374±0.00 N/A N/A 0.175±0.00 1.278±0.30 0.146±0.07 0.814±0.40 0.454±0.21 0.630±0.00 0.062±0.02 0.090±0.07 0.566±0.40 0.488±0.18
ENST00000452182 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.120±0.00 N/A N/A N/A
ENST00000472119 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000236107 ENST00000447809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.072±0.00 0.076±0.00 N/A N/A
ENST00000595268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000595647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000597623 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000599041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034810 ENSMUST00000042792 8.573±1.33 1.419±0.26 6.144±1.57 0.082±0.03 11.324±1.54 1.501±0.30 2.842±0.27 0.539±0.24 0.017±0.01 57.193±9.07 0.462±0.23 2.134±0.45 0.182±0.34 0.402±0.14
ENSMUSG00000075316 ENSMUST00000100063 N/A 0.076±0.00 0.038±0.00 N/A N/A 0.045±0.00 N/A 0.020±0.01 0.005±0.01 N/A N/A 0.022±0.01 0.005±0.00 N/A
ENSMUST00000100064 N/A N/A 0.016±0.00 1.154±0.96 N/A N/A 0.020±0.00 0.046±0.00 0.001±0.00 N/A N/A 0.021±0.01 0.199±0.19 N/A
ENSMUST00000112354 N/A 0.042±0.02 N/A N/A 0.007±0.00 0.059±0.00 0.021±0.00 0.015±0.00 0.002±0.00 0.022±0.00 N/A 0.040±0.01 0.006±0.00 0.006±0.00
ENSMUST00000141603 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A N/A N/A
ENSMUST00000151234 N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164384 N/A N/A N/A N/A N/A 0.110±0.02 0.022±0.00 0.040±0.00 0.001±0.00 0.003±0.00 N/A 0.012±0.00 N/A N/A
ENSMUST00000169900 N/A N/A N/A N/A N/A N/A N/A N/A 0.001±0.00 0.003±0.00 N/A 0.009±0.00 N/A N/A
ENSMUSG00000081307 ENSMUST00000119700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.146±0.08 N/A
ENSMUSG00000087301 ENSMUST00000141149 N/A N/A N/A 6.143±0.00 N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A
ENSMUST00000152740 N/A N/A N/A 4.933±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088994 ENSMUST00000158369 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A

Loading