C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type VII, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409855 SCN7A-001 ENSG00000136546 9606 - 2:166403573-166486968 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000409855
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000409855 0.589±0.00 0.095±0.00 0.070±0.00 0.177±0.00 5.706±0.00 3.362±0.76 1.267±0.00 0.316±0.00 3.337±0.66 3.847±0.00 0.568±0.40 0.464±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CV CIL_0006CV_0001 CGP 2:166195185-166494247

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005216 IEA ion channel activity
GO:0005248 IEA:IBA voltage-gated sodium channel activity
GO:0005272 IEA sodium channel activity
GO:0005515 IEA protein binding
GO:0005886 IBA plasma membrane
GO:0006811 IEA ion transport
GO:0006814 TAS:IEA sodium ion transport
GO:0006936 IEA muscle contraction
GO:0016020 IEA membrane
GO:0019228 IBA neuronal action potential
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IEA:IBA sodium ion transmembrane transport
GO:0055078 IEA sodium ion homeostasis
GO:0055085 IEA transmembrane transport
GO:0086010 IBA membrane depolarization during action potential
GO:0097386 IEA glial cell projection

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042792 Scn7a-001 protein_coding Mus_musculus 0 3860
ENSMUST00000169900 Scn9a-203 protein_coding Mus_musculus 0 206
ENSMUST00000100063 Scn9a-201 protein_coding Mus_musculus 0 206
ENSMUST00000164384 Scn9a-202 protein_coding Mus_musculus 0 206
ENSMUST00000112354 Scn9a-002 protein_coding Mus_musculus 0 206
ENSMUST00000100064 Scn9a-001 protein_coding Mus_musculus 0 206

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