| Transcript ID | Ovary | Placenta |
|---|---|---|
| ENST00000303354 | 0.208±0.00 | 0.179±0.07 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | sodium channel, voltage-gated, type IX, alpha subunit | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000303354  |
SCN9A-201 |
ENSG00000169432 |
9606 | - |
2:166195194-166375987  |
protein_coding |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0006CK | CIL_0006CK_0001 | CGP | 2:165989160-166375993 |
| CIL_0006CV | CIL_0006CV_0001 | CGP | 2:166195185-166494247 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0001518 | IEA | voltage-gated sodium channel complex |
| GO:0005216 | IEA | ion channel activity |
| GO:0005248 | IEA:IBA | voltage-gated sodium channel activity |
| GO:0005515 | IEA | protein binding |
| GO:0005886 | IBA | plasma membrane |
| GO:0006811 | IEA | ion transport |
| GO:0006814 | TAS:IEA | sodium ion transport |
| GO:0006954 | IEA | inflammatory response |
| GO:0016020 | IEA | membrane |
| GO:0019228 | IBA | neuronal action potential |
| GO:0034765 | IEA | regulation of ion transmembrane transport |
| GO:0035725 | IEA:IBA | sodium ion transmembrane transport |
| GO:0048266 | IEA | behavioral response to pain |
| GO:0055085 | IEA | transmembrane transport |
| GO:0086010 | IBA | membrane depolarization during action potential |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000164384
|
Scn9a-202 | protein_coding | Mus_musculus | 0 | 6996 |
|
ENSMUST00000100064
|
Scn9a-001 | protein_coding | Mus_musculus | 0 | 6996 |
|
ENSMUST00000169900
|
Scn9a-203 | protein_coding | Mus_musculus | 0 | 4647 |
|
ENSMUST00000100063
|
Scn9a-201 | protein_coding | Mus_musculus | 0 | 4647 |
|
ENSMUST00000112354
|
Scn9a-002 | protein_coding | Mus_musculus | 0 | 4599 |
|
ENSMUST00000100067
|
Scn2a1-201 | protein_coding | Mus_musculus | 0 | 2386 |
|
ENSMUST00000028377
|
Scn2a1-001 | protein_coding | Mus_musculus | 0 | 2386 |
|
ENSMUST00000066432
|
Scn3a-201 | protein_coding | Mus_musculus | 0 | 1818 |
|
ENSMUST00000100069
|
Scn3a-001 | protein_coding | Mus_musculus | 0 | 1818 |
|
ENSMUST00000112371
|
Scn1a-201 | protein_coding | Mus_musculus | 0 | 1744 |
|
ENSMUST00000094951
|
Scn1a-005 | protein_coding | Mus_musculus | 0 | 1744 |
|
ENSMUST00000077489
|
Scn1a-004 | protein_coding | Mus_musculus | 0 | 1744 |
|
ENSMUST00000112366
|
Scn1a-001 | protein_coding | Mus_musculus | 0 | 1744 |
|
ENSMUST00000156865
|
Scn1a-003 | processed_transcript | Mus_musculus | 0 | 935 |
|
ENSMUST00000108908
|
Scn8a-203 | protein_coding | Mus_musculus | 0 | 782 |
|
ENSMUST00000108909
|
Scn8a-204 | protein_coding | Mus_musculus | 0 | 782 |
|
ENSMUST00000108910
|
Scn8a-205 | protein_coding | Mus_musculus | 0 | 782 |
|
ENSMUST00000082209
|
Scn8a-201 | protein_coding | Mus_musculus | 0 | 782 |
|
ENSMUST00000151234
|
Scn9a-004 | retained_intron | Mus_musculus | 0 | 590 |
|
ENSMUST00000155838
|
Scn3a-003 | processed_transcript | Mus_musculus | 0 | 484 |
|
ENSDART00000022761
|
scn8ab-201 | protein_coding | Danio_rerio | 0 | 475 |
|
ENSDART00000151299
|
scn8ab-001 | protein_coding | Danio_rerio | 0 | 475 |
|
ENSMUST00000042792
|
Scn7a-001 | protein_coding | Mus_musculus | 0 | 433 |
|
ENSDART00000090994
|
scn1lab-201 | protein_coding | Danio_rerio | 0 | 370 |
|
ENSDART00000151247
|
scn1lab-001 | protein_coding | Danio_rerio | 0 | 370 |
|
ENSMUST00000126837
|
Scn3a-002 | protein_coding | Mus_musculus | 0 | 359 |
|
ENSMUST00000138368
|
Scn2a1-003 | processed_transcript | Mus_musculus | 5e-35 | 156 |
