C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sodium channel, voltage-gated, type IX, alpha subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409435 SCN9A-004 ENSG00000169432 9606 - 2:166198672-166311756 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonKidneyLiverLungOvaryTestisENST00000409435
Transcript ID Bladder Breast Colon Kidney Liver Lung Ovary Testis
ENST00000409435 0.133±0.00 0.351±0.00 1.358±0.00 1.619±0.00 0.509±0.00 0.083±0.00 0.240±0.00 1.428±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006CK CIL_0006CK_0001 CGP 2:165989160-166375993
CIL_0006CV CIL_0006CV_0001 CGP 2:166195185-166494247

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001518 IEA voltage-gated sodium channel complex
GO:0005216 IEA ion channel activity
GO:0005248 IEA:IBA voltage-gated sodium channel activity
GO:0005515 IEA protein binding
GO:0005886 IBA plasma membrane
GO:0006811 IEA ion transport
GO:0006814 TAS:IEA sodium ion transport
GO:0006954 IEA inflammatory response
GO:0016020 IEA membrane
GO:0019228 IBA neuronal action potential
GO:0034765 IEA regulation of ion transmembrane transport
GO:0035725 IEA:IBA sodium ion transmembrane transport
GO:0048266 IEA behavioral response to pain
GO:0055085 IEA transmembrane transport
GO:0086010 IBA membrane depolarization during action potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164384 Scn9a-202 protein_coding Mus_musculus 0 6793
ENSMUST00000100064 Scn9a-001 protein_coding Mus_musculus 0 6793
ENSMUST00000169900 Scn9a-203 protein_coding Mus_musculus 0 4484
ENSMUST00000100063 Scn9a-201 protein_coding Mus_musculus 0 4484
ENSMUST00000112354 Scn9a-002 protein_coding Mus_musculus 0 4484
ENSMUST00000100067 Scn2a1-201 protein_coding Mus_musculus 0 2386
ENSMUST00000028377 Scn2a1-001 protein_coding Mus_musculus 0 2386
ENSMUST00000066432 Scn3a-201 protein_coding Mus_musculus 0 1818
ENSMUST00000100069 Scn3a-001 protein_coding Mus_musculus 0 1818
ENSMUST00000112371 Scn1a-201 protein_coding Mus_musculus 0 1744
ENSMUST00000094951 Scn1a-005 protein_coding Mus_musculus 0 1744
ENSMUST00000077489 Scn1a-004 protein_coding Mus_musculus 0 1744
ENSMUST00000112366 Scn1a-001 protein_coding Mus_musculus 0 1744
ENSMUST00000156865 Scn1a-003 processed_transcript Mus_musculus 0 935
ENSMUST00000108908 Scn8a-203 protein_coding Mus_musculus 0 782
ENSMUST00000108909 Scn8a-204 protein_coding Mus_musculus 0 782
ENSMUST00000108910 Scn8a-205 protein_coding Mus_musculus 0 782
ENSMUST00000082209 Scn8a-201 protein_coding Mus_musculus 0 782
ENSMUST00000151234 Scn9a-004 retained_intron Mus_musculus 0 590
ENSMUST00000155838 Scn3a-003 processed_transcript Mus_musculus 0 484
ENSDART00000022761 scn8ab-201 protein_coding Danio_rerio 0 475
ENSDART00000151299 scn8ab-001 protein_coding Danio_rerio 0 475
ENSMUST00000042792 Scn7a-001 protein_coding Mus_musculus 0 433
ENSDART00000090994 scn1lab-201 protein_coding Danio_rerio 0 370
ENSDART00000151247 scn1lab-001 protein_coding Danio_rerio 0 370
ENSMUST00000126837 Scn3a-002 protein_coding Mus_musculus 0 359
ENSMUST00000138368 Scn2a1-003 processed_transcript Mus_musculus 3e-35 156

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