C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043498 Hdac3-001 ENSMUSG00000024454 10090 - 18:37936972-37954988 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043498
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043498 13.498±0.61 25.830±2.04 13.131±2.85 36.488±20.26 37.720±16.93 8.230±1.98 8.148±1.37 9.091±0.85 8.387±4.11 7.035±2.76 14.939±1.89 22.906±15.04 21.668±8.99 7.995±3.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QD CIL_0006QD_0002 CGP 18:37843601-37954988
CIL_0006QE CIL_0006QE_0002 CGP 18:37935844-37959179

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 TAS histone deacetylase complex
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003714 ISS transcription corepressor activity
GO:0004407 TAS histone deacetylase activity
GO:0005515 IPI protein binding
GO:0005634 IDA:TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 TAS cytoplasm
GO:0005876 IEA spindle microtubule
GO:0006351 IEA transcription, DNA-templated
GO:0006476 IEA protein deacetylation
GO:0007346 IDA regulation of mitotic cell cycle
GO:0008134 TAS transcription factor binding
GO:0016568 TAS chromatin modification
GO:0016575 IMP histone deacetylation
GO:0017053 ISS transcriptional repressor complex
GO:0019899 IEA enzyme binding
GO:0030332 IEA cyclin binding
GO:0031490 IDA chromatin DNA binding
GO:0032041 IEA NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0032922 IGI circadian regulation of gene expression
GO:0033558 IEA protein deacetylase activity
GO:0040014 IGI regulation of multicellular organism growth
GO:0042826 IEA histone deacetylase binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0046329 IEA negative regulation of JNK cascade
GO:0046969 IEA NAD-dependent histone deacetylase activity (H3-K9 specific)
GO:0046970 IEA NAD-dependent histone deacetylase activity (H4-K16 specific)
GO:0051225 IEA spindle assembly
GO:0070932 IEA histone H3 deacetylation
GO:0070933 IEA histone H4 deacetylation
GO:0097372 IEA NAD-dependent histone deacetylase activity (H3-K18 specific)

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000054626 hdac3-001 protein_coding Danio_rerio 0 857
ENSDART00000145250 hdac3-002 processed_transcript Danio_rerio 3e-26 124
ENST00000305264 HDAC3-001 protein_coding Homo_sapiens 0 1934
ENST00000459727 HDAC3-012 processed_transcript Homo_sapiens 0 436
ENST00000467533 HDAC3-005 retained_intron Homo_sapiens 0 396
ENST00000469207 HDAC3-013 processed_transcript Homo_sapiens 0 370
ENST00000469550 HDAC3-014 retained_intron Homo_sapiens 0 1676
ENST00000471968 HDAC3-004 retained_intron Homo_sapiens 1.99993e-41 172
ENST00000475549 HDAC3-010 retained_intron Homo_sapiens 1.4013e-45 185
ENST00000476739 HDAC3-008 retained_intron Homo_sapiens 0 283
ENST00000486618 HDAC3-009 retained_intron Homo_sapiens 0 446
ENST00000490808 HDAC3-006 retained_intron Homo_sapiens 0 263
ENST00000491581 HDAC3-011 retained_intron Homo_sapiens 0 610
ENST00000492407 HDAC3-007 retained_intron Homo_sapiens 0 241
ENST00000495485 HDAC3-003 retained_intron Homo_sapiens 0 553
ENST00000519474 HDAC3-015 nonsense_mediated_decay Homo_sapiens 0 763
ENST00000523088 HDAC3-016 protein_coding Homo_sapiens 0 713

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