C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000469550 HDAC3-014 ENSG00000171720 9606 - 5:141620876-141635164 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonOvaryENST00000469550
Transcript ID Adipose Adrenal Breast Colon Ovary
ENST00000469550 2.006±0.00 6.170±0.00 1.500±0.00 1.181±0.28 1.457±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006QD CIL_0006QD_0001 CGP 5:141515016-141636870
CIL_0006QE CIL_0006QE_0001 CGP 5:141620876-141641077

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043498 Hdac3-001 protein_coding Mus_musculus 0 1676
ENSMUST00000153945 Hdac3-002 processed_transcript Mus_musculus 0 778
ENSDART00000054626 hdac3-001 protein_coding Danio_rerio 0 760
ENSMUST00000144471 Hdac3-004 retained_intron Mus_musculus 0 507
ENSMUST00000143660 Hdac3-003 retained_intron Mus_musculus 0 466
ENSDART00000145250 hdac3-002 processed_transcript Danio_rerio 0 302

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