C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, gamma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043680 Tubg1-001 ENSMUSG00000035198 10090 + 11:101119938-101126419 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043680
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043680 6.300±1.78 8.955±4.14 3.495±1.89 11.325±6.14 3.462±1.69 4.151±0.40 3.734±1.18 4.444±0.90 6.438±3.27 3.001±0.42 13.520±1.00 6.549±7.76 18.238±14.60 8.270±1.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UQ CIL_0000UQ_0002 CGP 11:101096322-101126419
CIL_00068T CIL_00068T_0002 CGP 11:101119938-101161787

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000212 IEP meiotic spindle organization
GO:0000242 IDA pericentriolar material
GO:0000794 IDA condensed nuclear chromosome
GO:0000922 TAS spindle pole
GO:0000930 IEA gamma-tubulin complex
GO:0003924 IEA GTPase activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005737 ISS cytoplasm
GO:0005813 ISS centrosome
GO:0005814 IDA centriole
GO:0005815 TAS microtubule organizing center
GO:0005827 ISS polar microtubule
GO:0005876 IDA spindle microtubule
GO:0005881 IDA cytoplasmic microtubule
GO:0005929 IDA cilium
GO:0006184 IEA GTP catabolic process
GO:0007020 TAS microtubule nucleation
GO:0007052 TAS mitotic spindle organization
GO:0007088 TAS regulation of mitosis
GO:0031122 IEA cytoplasmic microtubule organization
GO:0031252 IDA cell leading edge
GO:0031513 IDA nonmotile primary cilium
GO:0036064 IDA ciliary basal body
GO:0045177 IDA apical part of cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000026701 tubg1-001 protein_coding Danio_rerio 0 1266
ENST00000251412 TUBG2-001 protein_coding Homo_sapiens 0 1803
ENST00000251413 TUBG1-001 protein_coding Homo_sapiens 0 2132
ENST00000418303 TUBG1P-001 processed_pseudogene Homo_sapiens 0 1620
ENST00000585894 FAM134C-002 protein_coding Homo_sapiens 2e-17 95
ENST00000588056 TUBG1-003 retained_intron Homo_sapiens 0 664
ENST00000588423 FAM134C-005 protein_coding Homo_sapiens 2e-17 94
ENST00000588870 TUBG2-002 retained_intron Homo_sapiens 0 1181
ENST00000589613 TUBG1-002 retained_intron Homo_sapiens 0 257
ENST00000589688 TUBG1-005 nonsense_mediated_decay Homo_sapiens 0 1356
ENST00000590396 TUBG2-003 retained_intron Homo_sapiens 2e-18 97
ENST00000591509 TUBG1-004 protein_coding Homo_sapiens 0 584
ENST00000591547 FAM134C-006 protein_coding Homo_sapiens 2e-17 94

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