C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, gamma 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000251413 TUBG1-001 ENSG00000131462 9606 + 17:42609676-42615234 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000251413
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000251413 13.620±0.00 14.974±0.00 3.451±0.00 13.726±4.09 16.801±0.00 5.242±1.78 8.304±5.93 22.373±0.00 6.652±3.28 8.138±5.47 24.481±19.65 22.190±7.06 21.818±4.44 108.998±0.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00045R CIL_00045R_0001 CGP 17:42572315-42610623
CIL_0000UQ CIL_0000UQ_0001 CGP 17:42579513-42615234
CIL_00068T CIL_00068T_0001 CGP 17:42609676-42667006

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000086 TAS G2/M transition of mitotic cell cycle
GO:0000212 ISS meiotic spindle organization
GO:0000226 TAS microtubule cytoskeleton organization
GO:0000242 IEA pericentriolar material
GO:0000278 TAS mitotic cell cycle
GO:0000794 ISS condensed nuclear chromosome
GO:0000930 TAS gamma-tubulin complex
GO:0003924 IEA GTPase activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005737 ISS cytoplasm
GO:0005813 IDA centrosome
GO:0005814 IEA centriole
GO:0005827 IDA polar microtubule
GO:0005829 TAS cytosol
GO:0005876 IEA spindle microtubule
GO:0005881 IEA cytoplasmic microtubule
GO:0005929 IEA cilium
GO:0006184 IEA GTP catabolic process
GO:0007020 IEA microtubule nucleation
GO:0031122 IEA cytoplasmic microtubule organization
GO:0031252 IEA cell leading edge
GO:0031513 IEA nonmotile primary cilium
GO:0036064 IEA ciliary basal body
GO:0043234 IEA protein complex
GO:0045177 IEA apical part of cell
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043680 Tubg1-001 protein_coding Mus_musculus 0 2132
ENSMUST00000043654 Tubg2-001 protein_coding Mus_musculus 0 1873
ENSDART00000026701 tubg1-001 protein_coding Danio_rerio 0 1266
ENSMUST00000137844 Tubg1-002 processed_transcript Mus_musculus 0 573

Loading