C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000044850 Abca9-001 ENSMUSG00000041797 10090 - 11:110100749-110168196 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLiverPlacentaTestisENSMUST00000044850
Transcript ID Adrenal Brain Colon Liver Placenta Testis
ENSMUST00000044850 0.669±0.13 0.724±0.00 0.613±0.13 0.357±0.42 0.245±0.19 1.092±0.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00037T CIL_00037T_0002 CGP 11:110100749-110251776

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006200 IEA ATP catabolic process
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269080 ABCA8-001 protein_coding Homo_sapiens 0 1118
ENST00000269081 ABCA10-001 protein_coding Homo_sapiens 5e-28 132
ENST00000284425 ABCA6-001 protein_coding Homo_sapiens 0 470
ENST00000340001 ABCA9-001 protein_coding Homo_sapiens 0 4058
ENST00000430352 ABCA8-201 protein_coding Homo_sapiens 0 1061
ENST00000446604 ABCA6-005 processed_transcript Homo_sapiens 0 470
ENST00000451020 ABCA11P-002 processed_transcript Homo_sapiens 0 401
ENST00000453985 ABCA9-002 protein_coding Homo_sapiens 0 2649
ENST00000461623 ABCA9-004 retained_intron Homo_sapiens 0 859
ENST00000504019 ABCA11P-001 transcribed_processed_pseudogene Homo_sapiens 0 401
ENST00000507854 ABCA11P-003 processed_transcript Homo_sapiens 0 401
ENST00000514396 ABCA11P-004 processed_transcript Homo_sapiens 0 401
ENST00000515578 ZNF721-007 nonsense_mediated_decay Homo_sapiens 0 401
ENST00000518929 ABCA10-004 nonsense_mediated_decay Homo_sapiens 4e-28 132
ENST00000522406 ABCA10-003 nonsense_mediated_decay Homo_sapiens 5e-28 132
ENST00000523419 ABCA10-005 nonsense_mediated_decay Homo_sapiens 4e-28 132
ENST00000586292 ABCA8-013 retained_intron Homo_sapiens 0 460
ENST00000586539 ABCA8-003 protein_coding Homo_sapiens 0 1118

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