Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	H6 homeobox 3
ENSMUST00000046093	Hmx3-001	ENSMUSG00000040148	10090	+	7:131542867-131544925	protein_coding

Expression Patterns

Transcript ID	Brain	Colon	Heart	Kidney	Liver	Lung	Placenta	Testis
ENSMUST00000046093	0.506±0.34	0.902±0.32	0.021±0.00	0.150±0.05	0.012±0.01	0.016±0.00	0.046±0.05	0.027±0.01

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0002WI	CIL_0002WI_0002	CGP	7:129591863-133123350
CIL_0001BE	CIL_0001BE_0002	CGP	7:130162451-133123350
CIL_0008DB	CIL_0008DB_0002	VISTA	7:131163946-131765852
CIL_0009A3	CIL_0009A3_0002	VISTA	7:131196657-131797909
CIL_0007QE	CIL_0007QE_0002	VISTA	7:131249727-131851322
CIL_00011R	CIL_00011R_0002	CGP	7:131410601-131544925
CIL_00099C	CIL_00099C_0002	VISTA	7:131412593-132013659
CIL_0007LX	CIL_0007LX_0002	UCNEbase	7:131465048-131797301
CIL_0008SI	CIL_0008SI_0002	VISTA	7:131477679-132078766
CIL_00011S	CIL_00011S_0002	CGP	7:131542867-131556589

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0005634	IEA	nucleus
GO:0006351	IEA	transcription, DNA-templated
GO:0006355	IEA	regulation of transcription, DNA-templated
GO:0007420	IGI	brain development
GO:0007566	IMP	embryo implantation
GO:0030154	IEA	cell differentiation
GO:0042472	IGI	inner ear morphogenesis
GO:0043565	IDA	sequence-specific DNA binding
GO:0050885	IMP	neuromuscular process controlling balance
GO:0060135	IMP	maternal process involved in female pregnancy

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSDART00000153363		protein_coding	Danio_rerio	0	239
ENSDART00000054822	nkx3.2-001	protein_coding	Danio_rerio	0.0000000000004	81
ENST00000258829	NKX2-8-001	protein_coding	Homo_sapiens	0.0000001	62
ENST00000357878	HMX3-001	protein_coding	Homo_sapiens	0	1522

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