C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family A (ABC1), member 8a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000046223 Abca8a-201 ENSMUSG00000041828 10090 - 11:110025636-110095937 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046223
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046223 2.063±0.23 1.133±0.24 4.457±0.32 0.086±0.04 4.078±0.91 0.448±0.01 4.460±1.00 0.891±0.24 5.453±5.55 3.478±1.77 2.072±0.72 3.347±3.35 0.103±0.09 0.133±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0006200 IEA ATP catabolic process
GO:0008150 ND biological_process
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269080 ABCA8-001 protein_coding Homo_sapiens 0 1232
ENST00000269081 ABCA10-001 protein_coding Homo_sapiens 0 521
ENST00000284425 ABCA6-001 protein_coding Homo_sapiens 0 477
ENST00000340001 ABCA9-001 protein_coding Homo_sapiens 0 1059
ENST00000430352 ABCA8-201 protein_coding Homo_sapiens 0 1592
ENST00000453985 ABCA9-002 protein_coding Homo_sapiens 0 1059
ENST00000518929 ABCA10-004 nonsense_mediated_decay Homo_sapiens 0 418
ENST00000519732 ABCA10-006 processed_transcript Homo_sapiens 0 521
ENST00000522406 ABCA10-003 nonsense_mediated_decay Homo_sapiens 0 521
ENST00000523419 ABCA10-005 nonsense_mediated_decay Homo_sapiens 0 416
ENST00000541225 ABCA8-005 retained_intron Homo_sapiens 0 1531
ENST00000586539 ABCA8-003 protein_coding Homo_sapiens 0 1592
ENST00000587206 ABCA8-010 retained_intron Homo_sapiens 0 405
ENST00000588458 ABCA8-014 retained_intron Homo_sapiens 0 313
ENST00000589533 ABCA8-004 non_stop_decay Homo_sapiens 0 1118
ENST00000589803 ABCA6-003 retained_intron Homo_sapiens 0 453
ENST00000615593 ABCA8-202 protein_coding Homo_sapiens 0 1110

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